RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PDCD5O14737 125 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLXNB1O43157 2135 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 HCRTO43612 131 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 MRPS14O60783 128 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 DNAL4O96015 105 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 CFDP00746 253 aaPredicted RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV2D-40P01614 121 aaPredicted RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLV3-1P01715 115 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 APOC3P02656 99 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 SAA2P0DJI9 122 aaPredicted RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLC2P0DOY2 106 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGLC3P0DOY3 106 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 RNASE2P10153 161 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 PRB4P10163 310 aaPredicted RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 RNASE3P12724 160 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCL3L1P16619 93 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 EDDM3BP56851 147 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 RPL37AP61513 92 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 HMGN3Q15651 99 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF56Q15929 161 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 PMCHL1Q16048 86 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TDRG1Q3Y452 100 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ETDBQ3ZM63 59 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 SPATA45Q537H7 98 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 PSMG4Q5JS54 123 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 C10orf128Q5T292 105 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 BVES-AS1Q5T3Y7 98 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q5VV11 94 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 HCP5Q6MZN7 132 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ALKAL2Q6UX46 152 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 DEFB132Q7Z7B7 95 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 COA5Q86WW8 74 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 C20orf197Q8N268 126 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 Q8N6K4 173 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00304Q8N9R0 145 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 COX7B2Q8TF08 81 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 C20orf78Q9BR46 151 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TXNDC17Q9BRA2 123 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TTTY12Q9BZ98 90 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 NXT2Q9NPJ8 142 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 CDC42SE2Q9NRR3 84 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 NDUFA4L2Q9NRX3 87 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 MRPL36Q9P0J6 103 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM14CQ9P0S9 112 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 LINC00474Q9P2X8 69 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 SNURFQ9Y675 71 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 R4GMQ9 66 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 V9GYH0 126 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARHGEF5Q12774 1597 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TMEM131LA2VDJ0 1609 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TARBP1Q13395 1621 aaKnown RBP0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCA9Q8IUA7 1624 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 CCDC180Q9P1Z9 1646 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ALKQ9UM73 1620 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 PTPRFP10586 1907 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TCHHQ07283 1943 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF407Q9C0G0 2248 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCN7AQ01118 1682 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 COL4A6Q14031 1691 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 HEATR5AQ86XA9 2040 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRPM6Q9BX84 2022 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 NUP188Q5SRE5 1749 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 KNDC1Q76NI1 1749 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 MYO5CQ9NQX4 1742 aa0.3□□□□□ -2.36
RNU4-54P-201ENST00000516428 ARHGAP32A7KAX9 2087 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NACAE9PAV3 2078 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NUP214P35658 2090 aaPredicted RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 RGPD2P0DJD1 1756 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SCN11AQ9UI33 1791 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ABCA7Q8IZY2 2146 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NKTRP30414 1462 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 AFDNP55196 1824 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CDK13Q14004 1512 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 URB2Q14146 1524 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 DUOX2Q9NRD8 1548 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRPM7Q96QT4 1865 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PLXNA1Q9UIW2 1896 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PTPRDP23468 1912 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZFC3H1O60293 1989 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 EML5Q05BV3 1969 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PREX2Q70Z35 1606 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 RAPGEF6Q8TEU7 1601 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CICQ96RK0 1608 aaPredicted RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PHRF1Q9P1Y6 1649 aaKnown RBP0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRGV2A0A075B6R0 118 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV3D-7A0A0C4DH55 119 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 IGKV3OR2-268A0A0C4DH90 116 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 A0A0G2JND7 137 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 TRBV6-5A0A0K0K1A5 114 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 NBDYA0A0U1RRE5 68 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 SPRR5A0A1B0GTR4 108 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 CLPSL1A2RUU4 121 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 ZNF815PA8K554 130 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 F8VRH5 84 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 H3BUT2 72 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 J3QKU1 62 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 HMGN4O00479 90 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 UQCR11O14957 56 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 PPP1R17O96001 155 aa0.29□□□□□ -2.36
RNU4-54P-201ENST00000516428 HMGN2P05204 90 aaKnown RBP0.29□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms