RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 PYY3Q5JQD4 70 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 C2orf66Q6UXQ4 117 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 ERASQ7Z444 233 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 MRAPQ8TCY5 172 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 RETNQ9HD89 108 aa11.31□□□□□ -0.6
NUP54-214ENST00000514307 UBE2D3P61077 147 aa11.3□□□□□ -0.6
NUP54-214ENST00000514307 UBE2D2P62837 147 aa11.3□□□□□ -0.6
NUP54-214ENST00000514307 S100A12P80511 92 aa11.3□□□□□ -0.6
NUP54-214ENST00000514307 TMEM141Q96I45 108 aa11.3□□□□□ -0.6
NUP54-214ENST00000514307 C12orf57Q99622 126 aa11.3□□□□□ -0.6
NUP54-214ENST00000514307 Q6ZN92 141 aa11.29□□□□□ -0.6
NUP54-214ENST00000514307 C20orf203Q8NBC4 194 aa11.29□□□□□ -0.6
NUP54-214ENST00000514307 Q9UF83 564 aa11.29□□□□□ -0.6
NUP54-214ENST00000514307 PKD1L1Q8TDX9 2849 aa11.29□□□□□ -0.6
NUP54-214ENST00000514307 F5H768 121 aa11.28□□□□□ -0.6
NUP54-214ENST00000514307 LINC00173Q6ZV60 143 aa11.28□□□□□ -0.6
NUP54-214ENST00000514307 SH2D6Q7Z4S9 175 aa11.28□□□□□ -0.6
NUP54-214ENST00000514307 PHLDA1Q8WV24 401 aaPredicted RBP11.28□□□□□ -0.6
NUP54-214ENST00000514307 GTSF1LQ9H1H1 148 aa11.28□□□□□ -0.6
NUP54-214ENST00000514307 CELA1Q9UNI1 258 aa11.28□□□□□ -0.6
NUP54-214ENST00000514307 GYPEP15421 78 aa11.27□□□□□ -0.61
NUP54-214ENST00000514307 C12orf74Q32Q52 190 aa11.27□□□□□ -0.61
NUP54-214ENST00000514307 PAPPA-AS1Q5QFB9 102 aa11.27□□□□□ -0.61
NUP54-214ENST00000514307 C11orf45Q8TAV5 145 aa11.27□□□□□ -0.61
NUP54-214ENST00000514307 A0A0J9YWU9 116 aa11.26□□□□□ -0.61
NUP54-214ENST00000514307 NPSP0C0P6 89 aa11.26□□□□□ -0.61
NUP54-214ENST00000514307 ATP6V0E2Q8NHE4 81 aa11.26□□□□□ -0.61
NUP54-214ENST00000514307 IGHV3-38A0A0C4DH36 116 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 NHLRC4P0CG21 123 aaPredicted RBP11.25□□□□□ -0.61
NUP54-214ENST00000514307 HTN3P15516 51 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 MRPL23Q16540 153 aaKnown RBP11.25□□□□□ -0.61
NUP54-214ENST00000514307 LGALS9CQ6DKI2 356 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 TIMM17AQ99595 171 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 B9D2Q9BPU9 175 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 PYGO1Q9Y3Y4 419 aa11.25□□□□□ -0.61
NUP54-214ENST00000514307 IGIPA6NJ69 53 aa11.24□□□□□ -0.61
NUP54-214ENST00000514307 H0Y8G0 127 aa11.24□□□□□ -0.61
NUP54-214ENST00000514307 H3BNG1 76 aa11.24□□□□□ -0.61
NUP54-214ENST00000514307 H7C423 109 aa11.24□□□□□ -0.61
NUP54-214ENST00000514307 DEFB104AQ8WTQ1 72 aa11.24□□□□□ -0.61
NUP54-214ENST00000514307 TRAV12-1A0A0B4J245 112 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 LOC100131303A0A0U1RQF7 123 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 LINC01545Q5VT33 79 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 DGAT2L7PQ6IED9 249 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 SPANXA1Q9NS26 97 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 CMYA5Q8N3K9 4069 aa11.23□□□□□ -0.61
NUP54-214ENST00000514307 TRBV25-1A0A075B6N4 114 aa11.22□□□□□ -0.61
NUP54-214ENST00000514307 TRAV26-1A0A087WT03 109 aa11.22□□□□□ -0.61
NUP54-214ENST00000514307 TMEM243Q9BU79 118 aa11.22□□□□□ -0.61
NUP54-214ENST00000514307 CHCHD7Q9BUK0 85 aa11.22□□□□□ -0.61
NUP54-214ENST00000514307 TIMM21Q9BVV7 248 aa11.22□□□□□ -0.61
NUP54-214ENST00000514307 HSBP1L1C9JCN9 74 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 UBE2L6O14933 153 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 RPL39P62891 51 aaKnown RBP11.21□□□□□ -0.61
NUP54-214ENST00000514307 Q8N976 141 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 VSIG2Q96IQ7 327 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 VCX2Q9H322 139 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 ICOSQ9Y6W8 199 aa11.21□□□□□ -0.61
NUP54-214ENST00000514307 A0A087WX48 190 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 TRBV6-8A0A0A6YYG3 113 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 A0A0J9YY99 117 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 LINC00694P0DN24 101 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 PMVKQ15126 192 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 TEX43Q6ZNM6 134 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 VAMP8Q9BV40 100 aa11.2□□□□□ -0.62
NUP54-214ENST00000514307 NTM-AS1Q6ZSK4 140 aa11.19□□□□□ -0.62
NUP54-214ENST00000514307 TMEM101Q96IK0 257 aa11.19□□□□□ -0.62
NUP54-214ENST00000514307 MEGF8Q7Z7M0 2845 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 NBEAL2Q6ZNJ1 2754 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 TRAV9-2A0A087WT02 112 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 DEFB131BA0A096LNP1 70 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 PRSS29PA6NIE9 313 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 AMMECR1LQ6DCA0 310 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 BAALCQ8WXS3 180 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 CST9LQ9H4G1 147 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 CHTOPQ9Y3Y2 248 aaKnown RBP11.18□□□□□ -0.62
NUP54-214ENST00000514307 CSDC2Q9Y534 153 aaKnown RBP11.18□□□□□ -0.62
NUP54-214ENST00000514307 NOTCH1P46531 2555 aa11.18□□□□□ -0.62
NUP54-214ENST00000514307 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.17□□□□□ -0.62
NUP54-214ENST00000514307 TRAV10A0A0B4J240 114 aa11.17□□□□□ -0.62
NUP54-214ENST00000514307 IGKV2-29A2NJV5 120 aaPredicted RBP11.17□□□□□ -0.62
NUP54-214ENST00000514307 DPM2O94777 84 aa11.17□□□□□ -0.62
NUP54-214ENST00000514307 PLNP26678 52 aa11.17□□□□□ -0.62
NUP54-214ENST00000514307 NANOS2P60321 138 aaKnown RBP11.17□□□□□ -0.62
NUP54-214ENST00000514307 MRPS36P82909 103 aaKnown RBP11.17□□□□□ -0.62
NUP54-214ENST00000514307 Q6ZTC4 211 aa11.17□□□□□ -0.62
NUP54-214ENST00000514307 MRPL52Q86TS9 123 aaKnown RBP11.17□□□□□ -0.62
NUP54-214ENST00000514307 UBE2D4Q9Y2X8 147 aa11.17□□□□□ -0.62
NUP54-214ENST00000514307 PKIAP61925 76 aa11.16□□□□□ -0.62
NUP54-214ENST00000514307 DEFA6Q01524 100 aa11.16□□□□□ -0.62
NUP54-214ENST00000514307 ODF1Q14990 250 aa11.16□□□□□ -0.62
NUP54-214ENST00000514307 CHCHD5Q9BSY4 110 aa11.16□□□□□ -0.62
NUP54-214ENST00000514307 F8VRH5 84 aa11.15□□□□□ -0.62
NUP54-214ENST00000514307 IGKCP01834 107 aa11.15□□□□□ -0.62
NUP54-214ENST00000514307 FGF6P10767 208 aa11.15□□□□□ -0.62
NUP54-214ENST00000514307 ZNF25P17030 456 aaPredicted RBP11.15□□□□□ -0.62
NUP54-214ENST00000514307 OR5A1Q8NGJ0 315 aa11.15□□□□□ -0.62
NUP54-214ENST00000514307 NACAE9PAV3 2078 aa11.15□□□□□ -0.63
NUP54-214ENST00000514307 IGLV4-3A0A075B6K6 122 aa11.14□□□□□ -0.63
NUP54-214ENST00000514307 TIRAPP58753 221 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 72.2 ms