RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 P01737 135 aa7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 BCL2P10415 239 aa7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 DGAT2L7PQ6IED9 249 aa7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 NIT2Q9NQR4 276 aa7.14□□□□□ -1.27
LIMCH1-214ENST00000512228 FAT3Q8TDW7 4589 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 A0A1B0GUV1 79 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 F2Z2F3 143 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 CHTF8P0CG12 524 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 CTRLP40313 264 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 TWIST1Q15672 202 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 C14orf177Q52M58 125 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 TMEM97Q5BJF2 176 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 RPL39LQ96EH5 51 aaKnown RBP7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 PKHD1L1Q86WI1 4243 aa7.13□□□□□ -1.27
LIMCH1-214ENST00000512228 RAB14P61106 215 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 WDR73Q6P4I2 378 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 SREK1IP1Q8N9Q2 155 aaPredicted RBP7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 SMIM12Q96EX1 92 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 TMEM243Q9BU79 118 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 CNFNQ9BYD5 112 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 DPH3P1Q9H4G8 78 aa7.12□□□□□ -1.27
LIMCH1-214ENST00000512228 hDV102S1A0JD36 115 aa7.11□□□□□ -1.27
LIMCH1-214ENST00000512228 H7C1H1 209 aa7.11□□□□□ -1.27
LIMCH1-214ENST00000512228 SMDT1Q9H4I9 107 aa7.11□□□□□ -1.27
LIMCH1-214ENST00000512228 FAM231BA6NCW3 169 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 TMEM250H0YL14 139 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 TRGC1P0CF51 173 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 RPL37AP61513 92 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 PKIAP61925 76 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 CNBPP62633 177 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 CIRBPQ14011 172 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 C15orf56Q8N910 161 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 PGLYRP4Q96LB8 373 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 FAM210AQ96ND0 272 aa7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 RPP21Q9H633 154 aaKnown RBP7.1□□□□□ -1.27
LIMCH1-214ENST00000512228 TRAV8-4A0A0B4J246 113 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 IGKV3OR2-268A0A0C4DH90 116 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 GAGE12HA6NDE8 117 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 OXTP01178 125 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 MT1HL1P0DM35 61 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 AMTP48728 403 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 CLRN3Q8NCR9 226 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 EIF5A2Q9GZV4 153 aaKnown RBP7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 BIN3Q9NQY0 253 aa7.09□□□□□ -1.27
LIMCH1-214ENST00000512228 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-214ENST00000512228 A0A087WYN8 130 aa7.08□□□□□ -1.28
LIMCH1-214ENST00000512228 IGKV2-29A2NJV5 120 aaPredicted RBP7.08□□□□□ -1.28
LIMCH1-214ENST00000512228 XKRY2A2RUG3 117 aa7.08□□□□□ -1.28
LIMCH1-214ENST00000512228 COTL1Q14019 142 aa7.07□□□□□ -1.28
LIMCH1-214ENST00000512228 PEA15Q15121 130 aa7.07□□□□□ -1.28
LIMCH1-214ENST00000512228 PRSS3P2Q8NHM4 247 aa7.07□□□□□ -1.28
LIMCH1-214ENST00000512228 RPS10P46783 165 aaKnown RBP7.06□□□□□ -1.28
LIMCH1-214ENST00000512228 HIGD2BQ4VC39 106 aa7.06□□□□□ -1.28
LIMCH1-214ENST00000512228 CLLU1Q5K131 121 aa7.06□□□□□ -1.28
LIMCH1-214ENST00000512228 CHCHD10Q8WYQ3 142 aaPredicted RBP7.06□□□□□ -1.28
LIMCH1-214ENST00000512228 RNF185Q96GF1 192 aa7.06□□□□□ -1.28
LIMCH1-214ENST00000512228 HMCN2Q8NDA2 5059 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 SDHAF1A6NFY7 115 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 UBE2L6O14933 153 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 GATCO43716 136 aaKnown RBP7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 COX6A2Q02221 97 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 FOXI1Q12951 378 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 FAM74A3Q4VXF1 159 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 SPACA4Q8TDM5 124 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 LINC00526Q96FQ7 95 aa7.05□□□□□ -1.28
LIMCH1-214ENST00000512228 IGHV3-64A0A075B6Q5 118 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 TSHBP01222 138 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 FGF6P10767 208 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 ESDP10768 282 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 ODF1Q14990 250 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 RNASEKQ6P5S7 137 aaKnown RBP7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 FAM231DQ6ZW35 169 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 DPH3Q96FX2 82 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 PLAC8Q9NZF1 115 aa7.04□□□□□ -1.28
LIMCH1-214ENST00000512228 SRP19P09132 144 aaKnown RBP7.03□□□□□ -1.28
LIMCH1-214ENST00000512228 CEBPGP53567 150 aa7.03□□□□□ -1.28
LIMCH1-214ENST00000512228 IFITM2Q01629 132 aa7.03□□□□□ -1.28
LIMCH1-214ENST00000512228 SERTAD4-AS1Q5TG53 156 aa7.03□□□□□ -1.28
LIMCH1-214ENST00000512228 TRBV6-5A0A0K0K1A5 114 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 ZNF727A8MUV8 499 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 C9JQL5 133 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 I3L3M4 83 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 NCR2O95944 276 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 RAB4AP20338 218 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 POLR2KP53803 58 aaKnown RBP7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 LINC01551Q86U37 167 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 SMIM7Q9BQ49 75 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 AP5S1Q9NUS5 200 aa7.02□□□□□ -1.29
LIMCH1-214ENST00000512228 GVQW2A0A096LPI5 108 aaPredicted RBP7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 IGKV2-24A0A0C4DH68 120 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 LINC00959A0A1B0GUT2 108 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 A8MWL6 223 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 SMKR1H3BMG3 65 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 PHOX2AO14813 284 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 PMCHP20382 165 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 XCL1P47992 114 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 AMMECR1LQ6DCA0 310 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 AMN1Q8IY45 258 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 TMEM242Q9NWH2 141 aa7.01□□□□□ -1.29
LIMCH1-214ENST00000512228 UBR4Q5T4S7 5183 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms