RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 SCXQ7RTU7 201 aa11.64□□□□□ -0.55
TPM3-220ENST00000509601 TMEM243Q9BU79 118 aa11.64□□□□□ -0.55
TPM3-220ENST00000509601 GFRA4Q9GZZ7 299 aa11.64□□□□□ -0.55
TPM3-220ENST00000509601 TRAV26-2A0A0B4J265 109 aa11.63□□□□□ -0.55
TPM3-220ENST00000509601 A0A1B0GVG6 124 aa11.63□□□□□ -0.55
TPM3-220ENST00000509601 HLA-DQA1P01909 254 aa11.63□□□□□ -0.55
TPM3-220ENST00000509601 REG3AQ06141 175 aa11.63□□□□□ -0.55
TPM3-220ENST00000509601 CHAC1Q9BUX1 264 aa11.63□□□□□ -0.55
TPM3-220ENST00000509601 FAT3Q8TDW7 4589 aa11.62□□□□□ -0.55
TPM3-220ENST00000509601 LRP1Q07954 4544 aaKnown RBP11.62□□□□□ -0.55
TPM3-220ENST00000509601 LINC00528Q8N1L1 170 aa11.62□□□□□ -0.55
TPM3-220ENST00000509601 A8MWL6 223 aa11.61□□□□□ -0.55
TPM3-220ENST00000509601 NDUFS6O75380 124 aaKnown RBP11.61□□□□□ -0.55
TPM3-220ENST00000509601 CEBPGP53567 150 aa11.61□□□□□ -0.55
TPM3-220ENST00000509601 CIRBP-AS1Q8TBR5 109 aa11.61□□□□□ -0.55
TPM3-220ENST00000509601 RPL39LQ96EH5 51 aaKnown RBP11.61□□□□□ -0.55
TPM3-220ENST00000509601 IGLV10-54A0A075B6I4 117 aa11.6□□□□□ -0.55
TPM3-220ENST00000509601 COTL1Q14019 142 aa11.6□□□□□ -0.55
TPM3-220ENST00000509601 DGAT2L7PQ6IED9 249 aa11.6□□□□□ -0.55
TPM3-220ENST00000509601 FAM210AQ96ND0 272 aa11.6□□□□□ -0.55
TPM3-220ENST00000509601 EIF5A2Q9GZV4 153 aaKnown RBP11.6□□□□□ -0.55
TPM3-220ENST00000509601 PKHD1L1Q86WI1 4243 aa11.6□□□□□ -0.55
TPM3-220ENST00000509601 TRAV8-4A0A0B4J246 113 aa11.59□□□□□ -0.55
TPM3-220ENST00000509601 SRP19P09132 144 aaKnown RBP11.59□□□□□ -0.55
TPM3-220ENST00000509601 CT83Q5H943 113 aa11.59□□□□□ -0.55
TPM3-220ENST00000509601 LINC01551Q86U37 167 aa11.59□□□□□ -0.55
TPM3-220ENST00000509601 C9orf163Q8N9P6 203 aa11.59□□□□□ -0.55
TPM3-220ENST00000509601 PLA2G1BP04054 148 aaKnown RBP11.58□□□□□ -0.56
TPM3-220ENST00000509601 AMTP48728 403 aa11.58□□□□□ -0.56
TPM3-220ENST00000509601 SMIM7Q9BQ49 75 aa11.58□□□□□ -0.56
TPM3-220ENST00000509601 GAS8-AS1O95177 125 aa11.57□□□□□ -0.56
TPM3-220ENST00000509601 KRTAP10-4P60372 401 aaPredicted RBP11.57□□□□□ -0.56
TPM3-220ENST00000509601 SMIM15Q7Z3B0 74 aa11.57□□□□□ -0.56
TPM3-220ENST00000509601 UBE2L6O14933 153 aa11.56□□□□□ -0.56
TPM3-220ENST00000509601 TEX261Q6UWH6 196 aa11.56□□□□□ -0.56
TPM3-220ENST00000509601 CLRN3Q8NCR9 226 aa11.56□□□□□ -0.56
TPM3-220ENST00000509601 TSKUQ8WUA8 353 aa11.56□□□□□ -0.56
TPM3-220ENST00000509601 OSTCQ9NRP0 149 aa11.56□□□□□ -0.56
TPM3-220ENST00000509601 SDHAF1A6NFY7 115 aa11.55□□□□□ -0.56
TPM3-220ENST00000509601 ZNF727A8MUV8 499 aa11.55□□□□□ -0.56
TPM3-220ENST00000509601 NCR2O95944 276 aa11.55□□□□□ -0.56
TPM3-220ENST00000509601 TRBV6-5A0A0K0K1A5 114 aa11.54□□□□□ -0.56
TPM3-220ENST00000509601 FAM231BA6NCW3 169 aa11.54□□□□□ -0.56
TPM3-220ENST00000509601 HIGD1CA8MV81 97 aa11.54□□□□□ -0.56
TPM3-220ENST00000509601 SLPIP03973 132 aa11.54□□□□□ -0.56
TPM3-220ENST00000509601 SDIM1Q6ZPB5 146 aa11.54□□□□□ -0.56
TPM3-220ENST00000509601 A0A1B0GUT8 65 aa11.53□□□□□ -0.56
TPM3-220ENST00000509601 RNF185Q96GF1 192 aa11.53□□□□□ -0.56
TPM3-220ENST00000509601 TMEM191AQ9H0A3 160 aa11.53□□□□□ -0.56
TPM3-220ENST00000509601 V9GYV3 84 aa11.53□□□□□ -0.56
TPM3-220ENST00000509601 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.52□□□□□ -0.57
TPM3-220ENST00000509601 IGKV2-29A2NJV5 120 aaPredicted RBP11.52□□□□□ -0.57
TPM3-220ENST00000509601 C9JQL5 133 aa11.52□□□□□ -0.57
TPM3-220ENST00000509601 PANO1I0J062 215 aa11.52□□□□□ -0.57
TPM3-220ENST00000509601 CNBPP62633 177 aaKnown RBP11.52□□□□□ -0.57
TPM3-220ENST00000509601 H7C423 109 aa11.51□□□□□ -0.57
TPM3-220ENST00000509601 I3L3M4 83 aa11.51□□□□□ -0.57
TPM3-220ENST00000509601 RAB4AP20338 218 aa11.51□□□□□ -0.57
TPM3-220ENST00000509601 POLR2KP53803 58 aaKnown RBP11.51□□□□□ -0.57
TPM3-220ENST00000509601 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP11.51□□□□□ -0.57
TPM3-220ENST00000509601 hDV102S1A0JD36 115 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 GAGE12HA6NDE8 117 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 APCSP02743 223 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 FGF6P10767 208 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 ESDP10768 282 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 PMCHP20382 165 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 TMEM241Q24JQ0 296 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 NUP35Q8NFH5 326 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 ISOC2Q96AB3 205 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 BORCS7Q96B45 105 aa11.5□□□□□ -0.57
TPM3-220ENST00000509601 IGKV3OR2-268A0A0C4DH90 116 aa11.49□□□□□ -0.57
TPM3-220ENST00000509601 RPS10P46783 165 aaKnown RBP11.49□□□□□ -0.57
TPM3-220ENST00000509601 RPL23P62829 140 aaKnown RBP11.49□□□□□ -0.57
TPM3-220ENST00000509601 SRSF3P84103 164 aaKnown RBP11.49□□□□□ -0.57
TPM3-220ENST00000509601 AMMECR1LQ6DCA0 310 aa11.49□□□□□ -0.57
TPM3-220ENST00000509601 RNASEKQ6P5S7 137 aaKnown RBP11.49□□□□□ -0.57
TPM3-220ENST00000509601 ST20Q9HBF5 79 aa11.49□□□□□ -0.57
TPM3-220ENST00000509601 TSHBP01222 138 aa11.48□□□□□ -0.57
TPM3-220ENST00000509601 FAM74A3Q4VXF1 159 aa11.48□□□□□ -0.57
TPM3-220ENST00000509601 AMN1Q8IY45 258 aa11.48□□□□□ -0.57
TPM3-220ENST00000509601 C15orf56Q8N910 161 aa11.48□□□□□ -0.57
TPM3-220ENST00000509601 KRTAP29-1A8MX34 341 aaPredicted RBP11.47□□□□□ -0.57
TPM3-220ENST00000509601 CHCHD10Q8WYQ3 142 aaPredicted RBP11.47□□□□□ -0.57
TPM3-220ENST00000509601 TRBV27A0A0K0K1C4 114 aa11.46□□□□□ -0.57
TPM3-220ENST00000509601 RIGQ13278 110 aa11.46□□□□□ -0.57
TPM3-220ENST00000509601 CIRBPQ14011 172 aaKnown RBP11.46□□□□□ -0.57
TPM3-220ENST00000509601 MRAP2Q96G30 205 aa11.46□□□□□ -0.57
TPM3-220ENST00000509601 AP5S1Q9NUS5 200 aa11.46□□□□□ -0.57
TPM3-220ENST00000509601 TMEM242Q9NWH2 141 aa11.46□□□□□ -0.57
TPM3-220ENST00000509601 SMKR1H3BMG3 65 aa11.45□□□□□ -0.58
TPM3-220ENST00000509601 NAT8Q9UHE5 227 aa11.45□□□□□ -0.58
TPM3-220ENST00000509601 J3QL48 77 aa11.44□□□□□ -0.58
TPM3-220ENST00000509601 ZNF25P17030 456 aaPredicted RBP11.44□□□□□ -0.58
TPM3-220ENST00000509601 CFAP161Q6P656 301 aa11.44□□□□□ -0.58
TPM3-220ENST00000509601 OR5A1Q8NGJ0 315 aa11.44□□□□□ -0.58
TPM3-220ENST00000509601 NAT8BQ9UHF3 227 aa11.44□□□□□ -0.58
TPM3-220ENST00000509601 IGHV3-64A0A075B6Q5 118 aa11.43□□□□□ -0.58
TPM3-220ENST00000509601 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.43□□□□□ -0.58
TPM3-220ENST00000509601 SMIM27A0A1W2PRY6 76 aa11.43□□□□□ -0.58
TPM3-220ENST00000509601 FOXI1Q12951 378 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms