RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 NKX6-2Q9C056 277 aaPredicted RBP2.51□□□□□ -2.01
USP54-217ENST00000498213 MAP1LC3BQ9GZQ8 125 aa2.51□□□□□ -2.01
USP54-217ENST00000498213 OTORQ9NRC9 128 aa2.51□□□□□ -2.01
USP54-217ENST00000498213 URGCP-MRPS24S4R325 110 aa2.51□□□□□ -2.01
USP54-217ENST00000498213 TRAV1-1A0A0B4J248 108 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 IGHV3-16A0A0C4DH30 117 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 CTXND1A0A1B0GTU2 59 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 TMEM218A2RU14 115 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 RAB19A4D1S5 217 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 UMAD1C9J7I0 102 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 SCO1O75880 301 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 PRM2P04554 102 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 SRP19P09132 144 aaKnown RBP2.5□□□□□ -2.01
USP54-217ENST00000498213 STAG3L2P0CL84 134 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 STAG3L3P0CL85 134 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 CDC34P49427 236 aaPredicted RBP2.5□□□□□ -2.01
USP54-217ENST00000498213 RPL37AP61513 92 aaKnown RBP2.5□□□□□ -2.01
USP54-217ENST00000498213 RPL19P84098 196 aaKnown RBP2.5□□□□□ -2.01
USP54-217ENST00000498213 BTN1A1Q13410 526 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 OR10J3Q5JRS4 329 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 ZNF506Q5JVG8 444 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 DNLZQ5SXM8 178 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 C10orf91Q5T1B1 145 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 DPPA3Q6W0C5 159 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 CYB561D1Q8N8Q1 229 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 NHLRC2Q8NBF2 726 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 SFT2D1Q8WV19 159 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 FAM167A-AS1Q96KT0 104 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 SLC25A2Q9BXI2 301 aa2.5□□□□□ -2.01
USP54-217ENST00000498213 TRAV34A0A0B4J273 112 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 RBFOX3A6NFN3 312 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 PANO1I0J062 215 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 M0R3E3 92 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 MBP02144 154 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 SNRPCP09234 159 aaKnown RBP2.49□□□□□ -2.01
USP54-217ENST00000498213 SFTA3P0C7M3 94 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 ARL14EPLP0DKL9 152 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 LINC00694P0DN24 101 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 PYYP10082 97 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 BCL2P10415 239 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 GCHFRP30047 84 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 MIAQ16674 131 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 UQCC3Q6UW78 93 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 COX8CQ7Z4L0 72 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 SLC25A29Q8N8R3 303 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 FXYD5Q96DB9 178 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 C9orf85Q96MD7 179 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 ACTR3CQ9C0K3 210 aaPredicted RBP2.49□□□□□ -2.01
USP54-217ENST00000498213 DPH3P1Q9H4G8 78 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 TREM1Q9NP99 234 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 MRPL16Q9NX20 251 aaKnown RBP2.49□□□□□ -2.01
USP54-217ENST00000498213 IL36BQ9NZH7 164 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 GNG13Q9P2W3 67 aa2.49□□□□□ -2.01
USP54-217ENST00000498213 A0A087WX48 190 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.48□□□□□ -2.01
USP54-217ENST00000498213 TRAV8-4A0A0B4J246 113 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 PGPA6NDG6 321 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 FAM74A7A6NL05 159 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 H3BTX0 84 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 OR7C2O60412 319 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 P01737 135 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 CXCL1P09341 107 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 UBE2G2P60604 165 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 CNBPP62633 177 aaKnown RBP2.48□□□□□ -2.01
USP54-217ENST00000498213 UBE2L3P68036 154 aaKnown RBP2.48□□□□□ -2.01
USP54-217ENST00000498213 CIRBPQ14011 172 aaKnown RBP2.48□□□□□ -2.01
USP54-217ENST00000498213 TMEM183BQ1AE95 376 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 LINC01620Q4KN68 170 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 FAM74A3Q4VXF1 159 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 CFAP126Q5VTH2 177 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 REG3GQ6UW15 175 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 NIT1Q86X76 327 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 TMEM183AQ8IXX5 376 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 TMEM75Q8N9X5 138 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 C5orf17Q8NAS9 161 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 SUN5Q8TC36 379 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 TMEM167BQ9NRX6 74 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 LINC00474Q9P2X8 69 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 PRO0461Q9UI25 63 aa2.48□□□□□ -2.01
USP54-217ENST00000498213 CARHSP1Q9Y2V2 147 aaKnown RBP2.48□□□□□ -2.01
USP54-217ENST00000498213 TRBV20OR9-2A0A075B6H5 130 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 A0A1W2PPV4 95 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 FABP5P3A8MUU1 101 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 KRBOX1C9JBD0 128 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 F8W036 122 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 CXorf1O96002 111 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 IGHV3-53P01767 116 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 APOC3P02656 99 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 CRPP02741 224 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 TYMSP04818 313 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 AKR1C3P42330 323 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 RANP62826 216 aaKnown RBP2.47□□□□□ -2.01
USP54-217ENST00000498213 MEF2BQ02080 365 aaPredicted RBP2.47□□□□□ -2.01
USP54-217ENST00000498213 ERCC8Q13216 396 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 PEA15Q15121 130 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 SMUG1Q53HV7 270 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 DAZ4Q86SG3 579 aaKnown RBP2.47□□□□□ -2.01
USP54-217ENST00000498213 EXOC3-AS1Q8N2X6 119 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 C9orf163Q8N9P6 203 aa2.47□□□□□ -2.01
USP54-217ENST00000498213 CIRBP-AS1Q8TBR5 109 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms