RNA–Protein interactions for RNA: ENST00000495528.1

VIM-207, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 962 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-207ENST00000495528 KCNS1Q96KK3 526 aa4.39□□□□□ -1.71
VIM-207ENST00000495528 C20orf144Q9BQM9 153 aa4.39□□□□□ -1.71
VIM-207ENST00000495528 MUC21A0A0G2JKD1 596 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 MUC21A0A140T8X8 626 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 A8MWL6 223 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 F5H768 121 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 ATP6V1G1O75348 118 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 TYMSP04818 313 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 S100A1P23297 94 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 S100A4P26447 101 aaKnown RBP4.38□□□□□ -1.71
VIM-207ENST00000495528 SVBPQ8N300 66 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 RPP21Q9H633 154 aaKnown RBP4.38□□□□□ -1.71
VIM-207ENST00000495528 LINC00588Q9Y4M8 146 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 V9GYV3 84 aa4.38□□□□□ -1.71
VIM-207ENST00000495528 IGHV3-16A0A0C4DH30 117 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 PLAC8L1A1L4L8 177 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 XKRY2A2RUG3 117 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 RPL37AP8A6NKH3 93 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 LYRM9A8MSI8 78 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 PPP1R2P9O14990 202 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 SPINK4O60575 86 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 ARMS2P0C7Q2 107 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 DEFB130BP0DP73 79 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 DEFB130AP0DP74 79 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 ASIPP42127 132 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 CCL18P55774 89 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 TCL1AP56279 114 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 RPS20P60866 119 aaKnown RBP4.37□□□□□ -1.71
VIM-207ENST00000495528 TDRG1Q3Y452 100 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 LCE3CQ5T5A8 94 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 LYZL1Q6UWQ5 148 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 PGLYRP4Q96LB8 373 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 LINC00467Q9BRT7 94 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 TPPP3Q9BW30 176 aa4.37□□□□□ -1.71
VIM-207ENST00000495528 FAT1Q14517 4588 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 H3BVH4 76 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 RNASE3P12724 160 aaKnown RBP4.36□□□□□ -1.71
VIM-207ENST00000495528 HIGD2BQ4VC39 106 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 REG3GQ6UW15 175 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 FER1L6-AS1Q8NA97 138 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 TSKUQ8WUA8 353 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 GTSF1Q8WW33 167 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 NOP10Q9NPE3 64 aaKnown RBP4.36□□□□□ -1.71
VIM-207ENST00000495528 IL36BQ9NZH7 164 aa4.36□□□□□ -1.71
VIM-207ENST00000495528 A0A087WWC5 75 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 SMIM27A0A1W2PRY6 76 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 HIGD1CA8MV81 97 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 SCO1O75880 301 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 ATP5G1P05496 136 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 NTF3P20783 257 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 RHEBQ15382 184 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 DNLZQ5SXM8 178 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 ZNF493Q6ZR52 646 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 NUP35Q8NFH5 326 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 TMEM263Q8WUH6 116 aaKnown RBP4.35□□□□□ -1.71
VIM-207ENST00000495528 C16orf74Q96GX8 76 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 SPXQ9BT56 116 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 PHLDA3Q9Y5J5 127 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 URGCP-MRPS24S4R325 110 aa4.35□□□□□ -1.71
VIM-207ENST00000495528 FAM231BA6NCW3 169 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 F2Z2F3 143 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 M0R2P5 195 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 M0R381 172 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 CXCL1P09341 107 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 OR5AL1P0C617 328 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 IGLC6P0CF74 106 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 INAFM2P0DMQ5 153 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 S100PP25815 95 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 FOXA3P55318 350 aaPredicted RBP4.34□□□□□ -1.71
VIM-207ENST00000495528 SPANXN1Q5VSR9 72 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 Q6ZTI0 123 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 C11orf72Q8NBR9 251 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 OR10AG1Q8NH19 301 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 RNASE8Q8TDE3 154 aaKnown RBP4.34□□□□□ -1.71
VIM-207ENST00000495528 C9orf85Q96MD7 179 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 TMEM242Q9NWH2 141 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 MRPL16Q9NX20 251 aaKnown RBP4.34□□□□□ -1.71
VIM-207ENST00000495528 NAT8BQ9UHF3 227 aa4.34□□□□□ -1.71
VIM-207ENST00000495528 TRGV1A0A0A0MS02 117 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 A0A0J9YY99 117 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 A0A1B0GUT8 65 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 SNAI2O43623 268 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 FUSP35637 526 aaKnown RBP eCLIP4.33□□□□□ -1.72
VIM-207ENST00000495528 CACNG7P62955 275 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 DAZ2Q13117 558 aaKnown RBP4.33□□□□□ -1.72
VIM-207ENST00000495528 RIGQ13278 110 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 ESRGQ1W209 222 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 MRPL54Q6P161 138 aaKnown RBP4.33□□□□□ -1.72
VIM-207ENST00000495528 KCNIP4Q6PIL6 250 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 CBLN2Q8IUK8 224 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 BORCS7Q96B45 105 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 IMMP2LQ96T52 175 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 SMCO4Q9NRQ5 59 aa4.33□□□□□ -1.72
VIM-207ENST00000495528 TRGV2A0A075B6R0 118 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 TRAV26-1A0A087WT03 109 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 TGIF2-C20orf24A0A0A6YYL0 155 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 IGHV3-73A0A0B4J1V6 119 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 IGHV3-53P01767 116 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 RAB4BP61018 213 aa4.32□□□□□ -1.72
VIM-207ENST00000495528 ELOBQ15370 118 aa4.32□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms