RNA–Protein interactions for RNA: ENST00000493829.5

USP39-218, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 1,660 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-218ENST00000493829 AMTP48728 403 aa13.37□□□□□ -0.27
USP39-218ENST00000493829 ESRGQ1W209 222 aa13.37□□□□□ -0.27
USP39-218ENST00000493829 NIT1Q86X76 327 aa13.37□□□□□ -0.27
USP39-218ENST00000493829 DYNC2H1Q8NCM8 4307 aaKnown RBP13.36□□□□□ -0.27
USP39-218ENST00000493829 Q0VG73 95 aa13.36□□□□□ -0.27
USP39-218ENST00000493829 STARD9Q9P2P6 4700 aa13.36□□□□□ -0.27
USP39-218ENST00000493829 TRBV6-8A0A0A6YYG3 113 aa13.35□□□□□ -0.27
USP39-218ENST00000493829 SERF1AO75920 110 aa13.35□□□□□ -0.27
USP39-218ENST00000493829 NDUFA6P56556 154 aa13.35□□□□□ -0.27
USP39-218ENST00000493829 PMCHL1Q16048 86 aa13.35□□□□□ -0.27
USP39-218ENST00000493829 LINC00614P0C842 121 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 LINC00310P59036 64 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 CASC10Q5T4H9 136 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 TRBV25-1A0A075B6N4 114 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.34□□□□□ -0.27
USP39-218ENST00000493829 IGHV1-24A0A0C4DH33 117 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 IGKV2-29A2NJV5 120 aaPredicted RBP13.34□□□□□ -0.27
USP39-218ENST00000493829 LAGE3Q14657 143 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 AP5S1Q9NUS5 200 aa13.34□□□□□ -0.27
USP39-218ENST00000493829 CHCHD5Q9BSY4 110 aa13.33□□□□□ -0.28
USP39-218ENST00000493829 CHCHD7Q9BUK0 85 aa13.33□□□□□ -0.28
USP39-218ENST00000493829 TENM2Q9NT68 2774 aa13.33□□□□□ -0.28
USP39-218ENST00000493829 TMEM243Q9BU79 118 aa13.32□□□□□ -0.28
USP39-218ENST00000493829 LINC00588Q9Y4M8 146 aa13.32□□□□□ -0.28
USP39-218ENST00000493829 C3orf84H3BNL1 204 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 NUPR1O60356 82 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 BTF3P20290 206 aaKnown RBP13.31□□□□□ -0.28
USP39-218ENST00000493829 CCL18P55774 89 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 TMEM97Q5BJF2 176 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 LELP1Q5T871 98 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 UBE2DNLQ8IWF7 75 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 RPL39P62891 51 aaKnown RBP13.31□□□□□ -0.28
USP39-218ENST00000493829 GAGE6Q13070 117 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 ORMDL2Q53FV1 153 aa13.31□□□□□ -0.28
USP39-218ENST00000493829 UBE2L6O14933 153 aa13.3□□□□□ -0.28
USP39-218ENST00000493829 HSBP1O75506 76 aa13.3□□□□□ -0.28
USP39-218ENST00000493829 TCTAP57738 103 aa13.3□□□□□ -0.28
USP39-218ENST00000493829 WFDC10BQ8IUB3 73 aa13.3□□□□□ -0.28
USP39-218ENST00000493829 CHCHD1Q96BP2 118 aaKnown RBP13.3□□□□□ -0.28
USP39-218ENST00000493829 LINC01546A6NGU7 62 aa13.29□□□□□ -0.28
USP39-218ENST00000493829 TIRAPP58753 221 aa13.29□□□□□ -0.28
USP39-218ENST00000493829 FAM19A2Q8N3H0 131 aa13.29□□□□□ -0.28
USP39-218ENST00000493829 TRAV8-6A0A0B4J262 113 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 ESDP10768 282 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 PDZD11Q5EBL8 140 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 Q8N3U1 123 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 K7EMI3 77 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 C20orf203Q8NBC4 194 aa13.28□□□□□ -0.28
USP39-218ENST00000493829 MRPS16Q9Y3D3 137 aaKnown RBP13.28□□□□□ -0.28
USP39-218ENST00000493829 TMEM262E9PQX1 116 aa13.27□□□□□ -0.29
USP39-218ENST00000493829 S100A6P06703 90 aa13.27□□□□□ -0.29
USP39-218ENST00000493829 C2orf66Q6UXQ4 117 aa13.27□□□□□ -0.29
USP39-218ENST00000493829 A0A096LNJ9 63 aa13.26□□□□□ -0.29
USP39-218ENST00000493829 PLECQ15149 4684 aaKnown RBP13.26□□□□□ -0.29
USP39-218ENST00000493829 CYSLTR1Q9Y271 337 aa13.25□□□□□ -0.29
USP39-218ENST00000493829 HBDP02042 147 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 AMMECR1LQ6DCA0 310 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 IGHV3-30P01768 117 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 IGHV3-33P01772 117 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 IGHV3-30-3P0DP02 117 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 IGHV3-30-5P0DP03 117 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 FGF6P10767 208 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 MPV17L2Q567V2 206 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 COA6Q5JTJ3 125 aaKnown RBP13.24□□□□□ -0.29
USP39-218ENST00000493829 Q8N976 141 aa13.24□□□□□ -0.29
USP39-218ENST00000493829 TMEM18Q96B42 140 aa13.23□□□□□ -0.29
USP39-218ENST00000493829 TOMM6Q96B49 74 aa13.22□□□□□ -0.29
USP39-218ENST00000493829 LYSTQ99698 3801 aa13.22□□□□□ -0.29
USP39-218ENST00000493829 UBE2D4Q9Y2X8 147 aa13.22□□□□□ -0.29
USP39-218ENST00000493829 A0A087WX48 190 aa13.21□□□□□ -0.29
USP39-218ENST00000493829 SNRPEP62304 92 aaKnown RBP13.21□□□□□ -0.29
USP39-218ENST00000493829 RBX1P62877 108 aa13.21□□□□□ -0.3
USP39-218ENST00000493829 RNASE13Q5GAN3 156 aaKnown RBP13.21□□□□□ -0.3
USP39-218ENST00000493829 OPRPNQ99935 248 aaPredicted RBP13.21□□□□□ -0.3
USP39-218ENST00000493829 IGLV4-60A0A075B6I1 120 aa13.2□□□□□ -0.3
USP39-218ENST00000493829 SIVA1O15304 175 aa13.2□□□□□ -0.3
USP39-218ENST00000493829 FABP4P15090 132 aa13.2□□□□□ -0.3
USP39-218ENST00000493829 SCGB3A1Q96QR1 104 aa13.2□□□□□ -0.3
USP39-218ENST00000493829 UPK3BQ9BT76 320 aa13.2□□□□□ -0.3
USP39-218ENST00000493829 LY6G6CO95867 125 aa13.19□□□□□ -0.3
USP39-218ENST00000493829 DGAT2L7PQ6IED9 249 aa13.19□□□□□ -0.3
USP39-218ENST00000493829 OR5A1Q8NGJ0 315 aa13.19□□□□□ -0.3
USP39-218ENST00000493829 H7C423 109 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 G0S2P27469 103 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 CLPSL2Q6UWE3 100 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 Q6ZUT4 128 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 LINC00173Q6ZV60 143 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 TMEM101Q96IK0 257 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 MRPL52Q86TS9 123 aaKnown RBP13.18□□□□□ -0.3
USP39-218ENST00000493829 HIST3H2BBQ8N257 126 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 Q9H8V8 135 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 SPANXA1Q9NS26 97 aa13.18□□□□□ -0.3
USP39-218ENST00000493829 ANGP03950 147 aaKnown RBP13.17□□□□□ -0.3
USP39-218ENST00000493829 IGIPA6NJ69 53 aa13.16□□□□□ -0.3
USP39-218ENST00000493829 PKIAP61925 76 aa13.16□□□□□ -0.3
USP39-218ENST00000493829 LINC00476Q8WZB0 136 aa13.16□□□□□ -0.3
USP39-218ENST00000493829 IGKV3OR2-268A0A0C4DH90 116 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 C5orf52A6NGY3 159 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 LEPROTL1O95214 131 aa13.15□□□□□ -0.3
USP39-218ENST00000493829 DNAH10OSP0CZ25 163 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms