RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, human

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP50-218	ENST00000493456	GIP	P09681	153 aa	Predicted RBP	10.97	□□□□□ -0.65
NUP50-218	ENST00000493456	AMT	P48728	403 aa		10.97	□□□□□ -0.65
NUP50-218	ENST00000493456	COTL1	Q14019	142 aa		10.97	□□□□□ -0.65
NUP50-218	ENST00000493456	FXYD6-FXYD2	A0A087WZ82	144 aa		10.96	□□□□□ -0.65
NUP50-218	ENST00000493456	PFDN1	O60925	122 aa		10.96	□□□□□ -0.65
NUP50-218	ENST00000493456	NIT2	Q9NQR4	276 aa		10.96	□□□□□ -0.65
NUP50-218	ENST00000493456	IGKV3OR2-268	A0A0C4DH90	116 aa		10.95	□□□□□ -0.66
NUP50-218	ENST00000493456	CACNG7	P62955	275 aa		10.95	□□□□□ -0.66
NUP50-218	ENST00000493456	FER1L6-AS1	Q8NA97	138 aa		10.95	□□□□□ -0.66
NUP50-218	ENST00000493456	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	10.95	□□□□□ -0.66
NUP50-218	ENST00000493456	TPPP3	Q9BW30	176 aa		10.95	□□□□□ -0.66
NUP50-218	ENST00000493456	IGLC6	P0CF74	106 aa		10.94	□□□□□ -0.66
NUP50-218	ENST00000493456	MUC2	Q02817	5179 aa		10.93	□□□□□ -0.66
NUP50-218	ENST00000493456	RPS20	P60866	119 aa	Known RBP	10.93	□□□□□ -0.66
NUP50-218	ENST00000493456	TRGC1	P0CF51	173 aa		10.92	□□□□□ -0.66
NUP50-218	ENST00000493456	FAM231B	A6NCW3	169 aa		10.91	□□□□□ -0.66
NUP50-218	ENST00000493456	AMMECR1L	Q6DCA0	310 aa		10.91	□□□□□ -0.66
NUP50-218	ENST00000493456	TMUB2	Q71RG4	321 aa		10.91	□□□□□ -0.66
NUP50-218	ENST00000493456	SFT2D1	Q8WV19	159 aa		10.91	□□□□□ -0.66
NUP50-218	ENST00000493456		F2Z2F3	143 aa		10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	RPL35	P42766	123 aa	Known RBP	10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	FOXI1	Q12951	378 aa		10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	MBD3L1	Q8WWY6	194 aa		10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	CARD19	Q96LW7	228 aa		10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	CYTL1	Q9NRR1	136 aa		10.9	□□□□□ -0.66
NUP50-218	ENST00000493456	XKRY2	A2RUG3	117 aa		10.89	□□□□□ -0.67
NUP50-218	ENST00000493456	OR2D3	Q8NGH3	330 aa		10.89	□□□□□ -0.67
NUP50-218	ENST00000493456		H7C423	109 aa		10.88	□□□□□ -0.67
NUP50-218	ENST00000493456	RNASEK	Q6P5S7	137 aa	Known RBP	10.88	□□□□□ -0.67
NUP50-218	ENST00000493456	IGHV1-58	A0A0C4DH39	117 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456		A0A1B0GV50	99 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	UMAD1	C9J7I0	102 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	NCR2	O95944	276 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	NTF3	P20783	257 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	ZNF664	Q8N3J9	261 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	KCNRG	Q8N5I3	272 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	FAM213B	Q8TBF2	198 aa		10.87	□□□□□ -0.67
NUP50-218	ENST00000493456	C19orf71	A6NCJ1	209 aa		10.86	□□□□□ -0.67
NUP50-218	ENST00000493456	OR5A1	Q8NGJ0	315 aa		10.86	□□□□□ -0.67
NUP50-218	ENST00000493456	ARPC5	O15511	151 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	APCS	P02743	223 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	ZNF25	P17030	456 aa	Predicted RBP	10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	XCL1	P47992	114 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	PTTG1IP	P53801	180 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	CENPW	Q5EE01	88 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	LYZL1	Q6UWQ5	148 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456		Q6ZNX1	250 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	C11orf52	Q96A22	123 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	SMIM12	Q96EX1	92 aa		10.85	□□□□□ -0.67
NUP50-218	ENST00000493456	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	10.84	□□□□□ -0.67
NUP50-218	ENST00000493456	IGKV2-29	A2NJV5	120 aa	Predicted RBP	10.84	□□□□□ -0.67
NUP50-218	ENST00000493456	FGF6	P10767	208 aa		10.84	□□□□□ -0.67
NUP50-218	ENST00000493456	PSORS1C2	Q9UIG4	136 aa		10.84	□□□□□ -0.67
NUP50-218	ENST00000493456		G3V3Q6	166 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	ZNF561-AS1	K7EIQ3	104 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	IFNA1	P01562	189 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	SYCN	Q0VAF6	134 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	GATD1	Q8NB37	220 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	LINC00526	Q96FQ7	95 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	MANBAL	Q9NQG1	85 aa		10.83	□□□□□ -0.68
NUP50-218	ENST00000493456	LOC107984640	A0A0U1RRK4	108 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	CCL25	O15444	150 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	H2AFB1	P0C5Y9	115 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	CTRL	P40313	264 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	C9orf62	Q8N4C0	152 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	BTF3L4	Q96K17	158 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	CNFN	Q9BYD5	112 aa		10.82	□□□□□ -0.68
NUP50-218	ENST00000493456	LINC00959	A0A1B0GUT2	108 aa		10.81	□□□□□ -0.68
NUP50-218	ENST00000493456	MT-ND6	P03923	174 aa		10.81	□□□□□ -0.68
NUP50-218	ENST00000493456	ISOC2	Q96AB3	205 aa		10.81	□□□□□ -0.68
NUP50-218	ENST00000493456	TMEM101	Q96IK0	257 aa		10.81	□□□□□ -0.68
NUP50-218	ENST00000493456	TRAV26-2	A0A0B4J265	109 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	CAMP	P49913	170 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	GNG4	P50150	75 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	GAGE2B	Q13066	116 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	TWIST1	Q15672	202 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	BIN3	Q9NQY0	253 aa		10.8	□□□□□ -0.68
NUP50-218	ENST00000493456	CD164L2	Q6UWJ8	174 aa		10.79	□□□□□ -0.68
NUP50-218	ENST00000493456		A0A0U1RQV1	116 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	SDHAF1	A6NFY7	115 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	CCL20	P78556	96 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	ZNF345	Q14585	488 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	SS18	Q15532	418 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	TEX261	Q6UWH6	196 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	RPL39L	Q96EH5	51 aa	Known RBP	10.78	□□□□□ -0.68
NUP50-218	ENST00000493456	GNG13	Q9P2W3	67 aa		10.78	□□□□□ -0.68
NUP50-218	ENST00000493456		A0A1W2PNN7	141 aa		10.77	□□□□□ -0.69
NUP50-218	ENST00000493456	EIF5A	P63241	154 aa	Known RBP	10.77	□□□□□ -0.69
NUP50-218	ENST00000493456	C1orf137	Q5JT78	98 aa		10.77	□□□□□ -0.69
NUP50-218	ENST00000493456	EIF5AL1	Q6IS14	154 aa	Known RBP	10.77	□□□□□ -0.69
NUP50-218	ENST00000493456	KRTAP9-2	Q9BYQ4	174 aa		10.77	□□□□□ -0.69
NUP50-218	ENST00000493456	IGLV4-69	A0A075B6H9	119 aa		10.76	□□□□□ -0.69
NUP50-218	ENST00000493456	RAB19	A4D1S5	217 aa		10.76	□□□□□ -0.69
NUP50-218	ENST00000493456	SMIM15	Q7Z3B0	74 aa		10.76	□□□□□ -0.69
NUP50-218	ENST00000493456	DIRC1	Q969H9	104 aa		10.76	□□□□□ -0.69
NUP50-218	ENST00000493456	FAM210A	Q96ND0	272 aa		10.76	□□□□□ -0.69
NUP50-218	ENST00000493456		I3L3M4	83 aa		10.75	□□□□□ -0.69
NUP50-218	ENST00000493456	APOM	O95445	188 aa		10.75	□□□□□ -0.69
NUP50-218	ENST00000493456	C9orf116	Q5BN46	136 aa	Predicted RBP	10.75	□□□□□ -0.69
NUP50-218	ENST00000493456	PRR26	Q8N8Z3	221 aa		10.75	□□□□□ -0.69

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