RNA–Protein interactions for RNA: ENST00000491967.1

SMARCB1-207, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 605 nt, Biotype processed transcript, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-207ENST00000491967 NUDT10Q8NFP7 164 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 LYPD6BQ8NI32 183 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 NUDT11Q96G61 164 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 GFRA4Q9GZZ7 299 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 DPH3P1Q9H4G8 78 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 MED9Q9NWA0 146 aa5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 LRP1Q07954 4544 aaKnown RBP5.38□□□□□ -1.55
SMARCB1-207ENST00000491967 IGLV4-60A0A075B6I1 120 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 K7EN84 100 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 IFNA1P01562 189 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 SLPIP03973 132 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 TRGC1P0CF51 173 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 OCC1Q8TAD7 63 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 TMEM243Q9BU79 118 aa5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.37□□□□□ -1.55
SMARCB1-207ENST00000491967 PANO1I0J062 215 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 HLA-DQA1P01909 254 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 MGPP08493 103 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 FOXA3P55318 350 aaPredicted RBP5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 BLOC1S1P78537 153 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 GATD1Q8NB37 220 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 GTSF1Q8WW33 167 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 TPPP3Q9BW30 176 aa5.36□□□□□ -1.55
SMARCB1-207ENST00000491967 TMEM250H0YL14 139 aa5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 NDUFS6O75380 124 aaKnown RBP5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 IFITM2Q01629 132 aa5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 CLPSL2Q6UWE3 100 aa5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 RPP21Q9H633 154 aaKnown RBP5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 PKHD1L1Q86WI1 4243 aa5.35□□□□□ -1.55
SMARCB1-207ENST00000491967 H7C423 109 aa5.34□□□□□ -1.55
SMARCB1-207ENST00000491967 NCR2O95944 276 aa5.34□□□□□ -1.55
SMARCB1-207ENST00000491967 HNRNPA3P51991 378 aaKnown RBP5.34□□□□□ -1.55
SMARCB1-207ENST00000491967 FAM231DQ6ZW35 169 aa5.34□□□□□ -1.55
SMARCB1-207ENST00000491967 RNASE7Q9H1E1 156 aaKnown RBP5.34□□□□□ -1.55
SMARCB1-207ENST00000491967 IGLV10-54A0A075B6I4 117 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 TRBV6-5A0A0K0K1A5 114 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 FAM231BA6NCW3 169 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 RAB14P61106 215 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 RPL37AP61513 92 aaKnown RBP5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 COTL1Q14019 142 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 TWIST1Q15672 202 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 CT83Q5H943 113 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 SERTAD4-AS1Q5TG53 156 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 RNF185Q96GF1 192 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 FAM210AQ96ND0 272 aa5.33□□□□□ -1.56
SMARCB1-207ENST00000491967 FAT3Q8TDW7 4589 aa5.32□□□□□ -1.56
SMARCB1-207ENST00000491967 TRAV26-2A0A0B4J265 109 aa5.32□□□□□ -1.56
SMARCB1-207ENST00000491967 hDV102S1A0JD36 115 aa5.32□□□□□ -1.56
SMARCB1-207ENST00000491967 AMTP48728 403 aa5.32□□□□□ -1.56
SMARCB1-207ENST00000491967 C15orf56Q8N910 161 aa5.32□□□□□ -1.56
SMARCB1-207ENST00000491967 IGHV3-64A0A075B6Q5 118 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 A8MWL6 223 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 MT1HL1P0DM35 61 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 ESDP10768 282 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 SPACA4Q8TDM5 124 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 RPL39LQ96EH5 51 aaKnown RBP5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 PLAC8Q9NZF1 115 aa5.31□□□□□ -1.56
SMARCB1-207ENST00000491967 HMCN2Q8NDA2 5059 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 A0A087WYN8 130 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 GVQW2A0A096LPI5 108 aaPredicted RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 GAGE12HA6NDE8 117 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 SDHAF1A6NFY7 115 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 UBE2L6O14933 153 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 ZNF25P17030 456 aaPredicted RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 POLR2KP53803 58 aaKnown RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 CFAP161Q6P656 301 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 Q6ZRU5 148 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 CHCHD10Q8WYQ3 142 aaPredicted RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 EIF5A2Q9GZV4 153 aaKnown RBP5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 AP5S1Q9NUS5 200 aa5.3□□□□□ -1.56
SMARCB1-207ENST00000491967 TRBV27A0A0K0K1C4 114 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 I3L3M4 83 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 GATCO43716 136 aaKnown RBP5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 GAS8-AS1O95177 125 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 TSHBP01222 138 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 CHTF8P0CG12 524 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 FGF6P10767 208 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 RPS10P46783 165 aaKnown RBP5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 CEBPGP53567 150 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 SRSF3P84103 164 aaKnown RBP5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 FOXI1Q12951 378 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 CLLU1Q5K131 121 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 MRPL52Q86TS9 123 aaKnown RBP5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 LINC01551Q86U37 167 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 TSKUQ8WUA8 353 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 TMEM191AQ9H0A3 160 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 OSTCQ9NRP0 149 aa5.29□□□□□ -1.56
SMARCB1-207ENST00000491967 APCSP02743 223 aa5.28□□□□□ -1.56
SMARCB1-207ENST00000491967 PEA15Q15121 130 aa5.28□□□□□ -1.56
SMARCB1-207ENST00000491967 SMIM15Q7Z3B0 74 aa5.28□□□□□ -1.56
SMARCB1-207ENST00000491967 OR5A1Q8NGJ0 315 aa5.28□□□□□ -1.56
SMARCB1-207ENST00000491967 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 LINC00959A0A1B0GUT2 108 aa5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 A0A1B0GUT8 65 aa5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 IGKV2-29A2NJV5 120 aaPredicted RBP5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 HIGD1CA8MV81 97 aa5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 SRP19P09132 144 aaKnown RBP5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 RAB4AP20338 218 aa5.27□□□□□ -1.57
SMARCB1-207ENST00000491967 COX6A2Q02221 97 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms