RNA–Protein interactions for RNA: ENST00000491769.1

COL6A3-212, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5

Gene COL6A3, Length 6,731 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-212ENST00000491769 SCXQ7RTU7 201 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 LY6LH3BQJ8 138 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 C3orf22Q8N5N4 141 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 LINC00467Q9BRT7 94 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 FAM167A-AS1Q96KT0 104 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 KPRPQ5T749 579 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-212ENST00000491769 C10orf99Q6UWK7 81 aa9.88□□□□□ -0.83
COL6A3-212ENST00000491769 E9PLD3 99 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 PDE6GP18545 87 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 HIVEP2P31629 2446 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 FAM208BQ5VWN6 2430 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 ODF3BA8MYP8 253 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 NDUFC2O95298 119 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 NANOS2P60321 138 aaKnown RBP9.87□□□□□ -0.83
COL6A3-212ENST00000491769 PLA2G2EQ9NZK7 142 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 DENND4AQ7Z401 1863 aa9.87□□□□□ -0.83
COL6A3-212ENST00000491769 CTRLP40313 264 aa9.86□□□□□ -0.83
COL6A3-212ENST00000491769 OXLD1Q5BKU9 147 aa9.86□□□□□ -0.83
COL6A3-212ENST00000491769 B5MCH6 92 aa9.86□□□□□ -0.83
COL6A3-212ENST00000491769 SPTSSBQ8NFR3 76 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 SMIM20Q8N5G0 67 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 K7EQG2 157 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 NLRC5Q86WI3 1866 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 NUP210Q8TEM1 1887 aaPredicted RBP9.85□□□□□ -0.83
COL6A3-212ENST00000491769 SPRY4Q9C004 299 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 C1orf158Q8N1D5 194 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 SS18L2Q9UHA2 77 aa9.85□□□□□ -0.83
COL6A3-212ENST00000491769 SPANXCQ9NY87 97 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 PCNX2A6NKB5 2137 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 CLUHP3Q96NS8 147 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 SMR3AQ99954 134 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 WFDC10AQ9H1F0 79 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 TRAV23DV6A0A075B6W5 121 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 PLAC8L1A1L4L8 177 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 FXYD2P54710 66 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 MIAQ16674 131 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 LINC01006Q8NI28 216 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 TRBV6-8A0A0A6YYG3 113 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 ODF1Q14990 250 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 NEXN-AS1Q8NBZ9 246 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 LINC00526Q96FQ7 95 aa9.84□□□□□ -0.83
COL6A3-212ENST00000491769 MED13LQ71F56 2210 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 SLPIP03973 132 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 MUC6Q6W4X9 2439 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 H7C423 109 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 C20orf173Q96LM9 149 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 ZFHX2Q9C0A1 2572 aaPredicted RBP9.83□□□□□ -0.84
COL6A3-212ENST00000491769 RPL37AP8A6NKH3 93 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 Q8N976 141 aa9.83□□□□□ -0.84
COL6A3-212ENST00000491769 FSHBP01225 129 aa9.82□□□□□ -0.84
COL6A3-212ENST00000491769 ODF3Q96PU9 254 aa9.82□□□□□ -0.84
COL6A3-212ENST00000491769 TMEM131Q92545 1883 aa9.82□□□□□ -0.84
COL6A3-212ENST00000491769 IGHV4-30-4P0DP06 118 aa9.82□□□□□ -0.84
COL6A3-212ENST00000491769 LOC107984640A0A0U1RRK4 108 aa9.81□□□□□ -0.84
COL6A3-212ENST00000491769 KIF26AQ9ULI4 1882 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-212ENST00000491769 CFAP126Q5VTH2 177 aa9.81□□□□□ -0.84
COL6A3-212ENST00000491769 C18orf65Q6ZTR6 163 aa9.81□□□□□ -0.84
COL6A3-212ENST00000491769 ZNF80P51504 273 aaPredicted RBP9.81□□□□□ -0.84
COL6A3-212ENST00000491769 C3orf84H3BNL1 204 aa9.81□□□□□ -0.84
COL6A3-212ENST00000491769 ZNF702PQ9H963 129 aa9.8□□□□□ -0.84
COL6A3-212ENST00000491769 TEN1Q86WV5 123 aa9.8□□□□□ -0.84
COL6A3-212ENST00000491769 A0A0J9YXY3 114 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 PROK1P58294 105 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 GDF5OSQ5U4N7 250 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 C10orf91Q5T1B1 145 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 SERP1Q9Y6X1 66 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 SPATA12Q7Z6I5 190 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 MLST8Q9BVC4 326 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 ANAPC1Q9H1A4 1944 aa9.79□□□□□ -0.84
COL6A3-212ENST00000491769 TRBV6-4A0A1B0GX49 114 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 CDKN2A-AS1Q9UH64 79 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 IGLV5-52A0A0A0MRZ9 124 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 IGLV4-69A0A075B6H9 119 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 PRR15LQ9BU68 103 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 SPANXB1Q9NS25 103 aaPredicted RBP9.78□□□□□ -0.84
COL6A3-212ENST00000491769 TAX1BP3O14907 124 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 PIK3CD-AS1Q5SR53 167 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 LINC00474Q9P2X8 69 aa9.78□□□□□ -0.84
COL6A3-212ENST00000491769 H3BT86 120 aa9.77□□□□□ -0.84
COL6A3-212ENST00000491769 NOTCH4Q99466 2003 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 FAM236DA0A1B0GTK5 79 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 NUPR1O60356 82 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 FAM236CP0DP71 79 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 WFDC2Q14508 124 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 LOC100131303A0A0U1RQF7 123 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 WFDC13Q8IUB5 93 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 PSMG3-AS1Q96PY0 264 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 IGLV2-14P01704 120 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 CCKP06307 115 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 MPLKIPQ8TAP9 179 aa9.77□□□□□ -0.85
COL6A3-212ENST00000491769 SHANK1Q9Y566 2161 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 TCL1BO95988 128 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 CIRBP-AS1Q8TBR5 109 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 BRK1Q8WUW1 75 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 IGLV2-8P01709 118 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 LELP1Q5T871 98 aa9.76□□□□□ -0.85
COL6A3-212ENST00000491769 RBX1P62877 108 aa9.75□□□□□ -0.85
COL6A3-212ENST00000491769 HIGD1BQ9P298 99 aa9.75□□□□□ -0.85
COL6A3-212ENST00000491769 C22orf34Q6ZV56 151 aa9.75□□□□□ -0.85
COL6A3-212ENST00000491769 IBA57-AS1B1ANH7 110 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms