RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 PPP1R17O96001 155 aa10.88□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 ANGP03950 147 aaKnown RBP10.88□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 SPATA12Q7Z6I5 190 aa10.88□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 Q8N976 141 aa10.88□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 UBE2WQ96B02 151 aa10.88□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 A0A087WTM6 91 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 I3L3M4 83 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 UBE2L6O14933 153 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 PMCHP20382 165 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 RBX1P62877 108 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 Q0VG73 95 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 RMI2Q96E14 147 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 TMEM70Q9BUB7 260 aa10.87□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 CRPP02741 224 aa10.86□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 APCSP02743 223 aa10.86□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 NRACQ8N912 160 aa10.86□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 CTDSP1Q9GZU7 261 aa10.86□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 POLR2KP53803 58 aaKnown RBP10.85□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 C10orf91Q5T1B1 145 aa10.85□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 BTF3L4Q96K17 158 aa10.85□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 IMMP2LQ96T52 175 aa10.85□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 COX11Q9Y6N1 276 aa10.85□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 IGKV2D-24A0A075B6R9 120 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 C16orf90A8MZG2 172 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 CKS2P33552 79 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 KRTAP10-2P60368 255 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 SUMO2P61956 95 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 ENHOQ6UWT2 76 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 TMEM242Q9NWH2 141 aa10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 CARHSP1Q9Y2V2 147 aaKnown RBP10.84□□□□□ -0.67
MSH5-SAPCD1-206ENST00000491552 TRBV27A0A0K0K1C4 114 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 A0A1B0GUV1 79 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 LRCOL1A6NCL2 159 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 TSHBP01222 138 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 C20orf203Q8NBC4 194 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 DNAH11Q96DT5 4516 aa10.83□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 IGLV4-60A0A075B6I1 120 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 IGKV2-29A2NJV5 120 aaPredicted RBP10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 D6R8Y8 96 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 H7C423 109 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 VCYO14598 125 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PPBPP02775 128 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 CLPSL2Q6UWE3 100 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 LINC00269Q8N2A0 174 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 C1orf43Q9BWL3 253 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PRR34Q9NV39 138 aa10.82□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 TRBV24-1A0A075B6N3 115 aa10.81□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 MIAQ16674 131 aa10.81□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 AMMECR1LQ6DCA0 310 aa10.81□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 C20orf78Q9BR46 151 aa10.81□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 TRAV9-1A0A075B6T8 112 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 TNFRSF6BO95407 300 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 ESDP10768 282 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 FCER1GP30273 86 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 REG3AQ06141 175 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 RHEBQ15382 184 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 CDPF1Q6NVV7 123 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 ORMDL3Q8N138 153 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 MAPKAPK5-AS1Q8N8E1 139 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 CLRN3Q8NCR9 226 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 KIR2DL4Q99706 377 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PGPEP1Q9NXJ5 209 aa10.8□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 C7orf77A4D0Y5 90 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PHOX2AO14813 284 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 NPYP01303 97 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 S100PP25815 95 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 RPL32P62910 135 aaKnown RBP10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 Q8N814 137 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PKHD1P08F94 4074 aa10.79□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 FGF6P10767 208 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 WFDC2Q14508 124 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 RNASEKQ6P5S7 137 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 TMEM136Q6ZRR5 245 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 BAALCQ8WXS3 180 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 PRELID3AQ96N28 172 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 SMIM2Q9BVW6 85 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 RPS10P5Q9NQ39 176 aa10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 DYNC1H1Q14204 4646 aaKnown RBP10.78□□□□□ -0.68
MSH5-SAPCD1-206ENST00000491552 LECT2O14960 151 aa10.77□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 ZNF25P17030 456 aaPredicted RBP10.77□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 FUSP35637 526 aaKnown RBP eCLIP10.77□□□□□ -0.692e-8■□□□□ 8
MSH5-SAPCD1-206ENST00000491552 NDUFA5Q16718 116 aa10.76□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 NTN5Q8WTR8 489 aaPredicted RBP10.76□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 TMEM101Q96IK0 257 aa10.76□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 LAMTOR2Q9Y2Q5 125 aa10.76□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 TRAV8-4A0A0B4J246 113 aa10.75□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 TCAPO15273 167 aa10.75□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 HLA-DQA1P01909 254 aa10.75□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 APOC3P02656 99 aa10.75□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 IGLV10-54A0A075B6I4 117 aa10.74□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 KRTAP26-1Q6PEX3 210 aa10.74□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 MRPL52Q86TS9 123 aaKnown RBP10.74□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 SVBPQ8N300 66 aa10.74□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 OR5A1Q8NGJ0 315 aa10.74□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 IGLV5-52A0A0A0MRZ9 124 aa10.73□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 IGKV3OR2-268A0A0C4DH90 116 aa10.73□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 SMAGPQ0VAQ4 97 aa10.73□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 TMEM18Q96B42 140 aa10.73□□□□□ -0.69
MSH5-SAPCD1-206ENST00000491552 MAP1LC3AQ9H492 121 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms