RNA–Protein interactions for RNA: ENST00000490924.1

VPS41-214, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-214ENST00000490924 TIMM21Q9BVV7 248 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 YAE1D1Q9NRH1 226 aa4.29□□□□□ -1.72
VPS41-214ENST00000490924 IGLV4-3A0A075B6K6 122 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 IGLV5-45A0A087WSX0 123 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 IGHV3-49A0A0A0MS15 119 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 TINCRA0A1B0GVN0 87 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 H3BT86 120 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 H3BUX3 64 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 TRBV12-3P01733 135 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 ZNF688P0C7X2 276 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 SCGB1C2P0DMR2 95 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 ZNF22P17026 224 aaPredicted RBP4.28□□□□□ -1.72
VPS41-214ENST00000490924 SRD5A1P18405 259 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 LY6DQ14210 128 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 ATXN8Q156A1 80 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 AMTNQ6UX39 209 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 SH2D6Q7Z4S9 175 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 FAM19A3Q7Z5A8 133 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 TMEM219Q86XT9 240 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 TMEM263Q8WUH6 116 aaKnown RBP4.28□□□□□ -1.72
VPS41-214ENST00000490924 UBE2E2Q96LR5 201 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 SPXQ9BT56 116 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 GTSF1LQ9H1H1 148 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 KLK15Q9H2R5 256 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 ERG28Q9UKR5 140 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 ABCA12Q86UK0 2595 aa4.28□□□□□ -1.72
VPS41-214ENST00000490924 AGRNO00468 2067 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 IGHV1-58A0A0C4DH39 117 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 IGHV4-61A0A0C4DH41 118 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 LOC107984156A0A0G2JMH3 177 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 SLC25A20O43772 301 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 TCL1BO95988 128 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 COX6CP09669 75 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 TIRAPP58753 221 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 TMEM170BQ5T4T1 132 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 Q6ZQT7 251 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 Q6ZUT4 128 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 ARL17AQ8IVW1 177 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 Q96MF0 132 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 CSDC2Q9Y534 153 aaKnown RBP4.27□□□□□ -1.73
VPS41-214ENST00000490924 DNHD1Q96M86 4753 aa4.27□□□□□ -1.73
VPS41-214ENST00000490924 HRNRQ86YZ3 2850 aaPredicted RBP4.26□□□□□ -1.73
VPS41-214ENST00000490924 NOTCH2Q04721 2471 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 TRBV10-2A0A0K0K1G8 114 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 A4D1N5 150 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 F5H697 171 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 IGHV4-38-2P0DP08 117 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 PRB4P10163 310 aaPredicted RBP4.26□□□□□ -1.73
VPS41-214ENST00000490924 PSMB2P49721 201 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 TSPEAR-AS2P59090 65 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 RPL39P62891 51 aaKnown RBP4.26□□□□□ -1.73
VPS41-214ENST00000490924 ZNF56Q15929 161 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 MIAQ16674 131 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 DEFB121Q5J5C9 76 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 HIST2H2BCQ6DN03 193 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 ZFAND6Q6FIF0 208 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 Q8N2B8 174 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 ANKRD29Q8N6D5 301 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 TEX29Q8N6K0 151 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 KLHL30-AS1Q8NEE0 82 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 CCL19Q99731 98 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 LITAFQ99732 161 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 FBN3Q75N90 2809 aa4.26□□□□□ -1.73
VPS41-214ENST00000490924 ARHGAP32A7KAX9 2087 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 TRAV12-3A0A0B4J271 114 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 TRBV10-1A0A0K0K1A3 114 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 DNAJC9-AS1A6NH13 148 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 F6UB75 175 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 UTP20O75691 2785 aaKnown RBP4.25□□□□□ -1.73
VPS41-214ENST00000490924 IGHV3-53P01767 116 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 ACYP1P07311 99 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 SPINK8P0C7L1 97 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 IGHV3-30-3P0DP02 117 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 CKS1BP61024 79 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 BLCAPP62952 87 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 ZNF415Q09FC8 603 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 VSIG2Q96IQ7 327 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 CARD19Q96LW7 228 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 CITED1Q99966 193 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 HIVEP3Q5T1R4 2406 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 TACC2O95359 2948 aa4.25□□□□□ -1.73
VPS41-214ENST00000490924 NF1P21359 2839 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 CSMD1Q96PZ7 3565 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 A0A087WWL8 130 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 TRAV25A0A0B4J276 109 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 NDUFA1O15239 70 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 IGHV3-11P01762 117 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 ATP5J2P56134 94 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 LINC01620Q4KN68 170 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 BRD3OSQ6XYD6 125 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 TMEM61Q8N0U2 210 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 IMUPQ9GZP8 106 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 PEMTQ9UBM1 199 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 VPREB3Q9UKI3 123 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 FLNCQ14315 2725 aa4.24□□□□□ -1.73
VPS41-214ENST00000490924 SPTBN1Q01082 2364 aaKnown RBP4.24□□□□□ -1.73
VPS41-214ENST00000490924 SPTAN1Q13813 2472 aaKnown RBP4.23□□□□□ -1.73
VPS41-214ENST00000490924 DOPEY1Q5JWR5 2465 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 MUC4Q99102 2169 aa4.23□□□□□ -1.73
VPS41-214ENST00000490924 A0A096LNT2 108 aa4.23□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms