RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 NUP35Q8NFH5 326 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 RNF185Q96GF1 192 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 FAM30AQ9NZY2 134 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 NAT8Q9UHE5 227 aa11.91□□□□□ -0.5
COL9A3-214ENST00000490398 IGLV4-60A0A075B6I1 120 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 A0A1B0GUT8 65 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 LINC01620Q4KN68 170 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 KRTAP26-1Q6PEX3 210 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 SMIM15Q7Z3B0 74 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 TMEM243Q9BU79 118 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 PRR34Q9NV39 138 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 COX11Q9Y6N1 276 aa11.9□□□□□ -0.5
COL9A3-214ENST00000490398 CRPP02741 224 aa11.89□□□□□ -0.51
COL9A3-214ENST00000490398 Q0VG73 95 aa11.89□□□□□ -0.51
COL9A3-214ENST00000490398 C1orf43Q9BWL3 253 aa11.89□□□□□ -0.51
COL9A3-214ENST00000490398 FAM231BA6NCW3 169 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 AMTP48728 403 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 PKIAP61925 76 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 COTL1Q14019 142 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 FRZBQ92765 325 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 BORCS7Q96B45 105 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 TMEM191AQ9H0A3 160 aa11.88□□□□□ -0.51
COL9A3-214ENST00000490398 RAB4AP20338 218 aa11.87□□□□□ -0.51
COL9A3-214ENST00000490398 RPS10P46783 165 aaKnown RBP11.87□□□□□ -0.51
COL9A3-214ENST00000490398 AMN1Q8IY45 258 aa11.87□□□□□ -0.51
COL9A3-214ENST00000490398 SDHAF1A6NFY7 115 aa11.86□□□□□ -0.51
COL9A3-214ENST00000490398 SMKR1H3BMG3 65 aa11.86□□□□□ -0.51
COL9A3-214ENST00000490398 MIAQ16674 131 aa11.86□□□□□ -0.51
COL9A3-214ENST00000490398 SMDT1Q9H4I9 107 aa11.86□□□□□ -0.51
COL9A3-214ENST00000490398 MYCBP2O75592 4640 aa11.86□□□□□ -0.51
COL9A3-214ENST00000490398 IGLV10-54A0A075B6I4 117 aa11.85□□□□□ -0.51
COL9A3-214ENST00000490398 TRBV6-5A0A0K0K1A5 114 aa11.85□□□□□ -0.51
COL9A3-214ENST00000490398 SMR3BP02814 79 aaPredicted RBP11.85□□□□□ -0.51
COL9A3-214ENST00000490398 REG3AQ06141 175 aa11.85□□□□□ -0.51
COL9A3-214ENST00000490398 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.84□□□□□ -0.51
COL9A3-214ENST00000490398 A0A1B0GUV1 79 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 SMIM27A0A1W2PRY6 76 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 IGKV2-29A2NJV5 120 aaPredicted RBP11.84□□□□□ -0.51
COL9A3-214ENST00000490398 NCR2O95944 276 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 HLA-DQA1P01909 254 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 NAT8BQ9UHF3 227 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 PKHD1L1Q86WI1 4243 aa11.84□□□□□ -0.51
COL9A3-214ENST00000490398 USP17L23D6RBM5 183 aa11.83□□□□□ -0.52
COL9A3-214ENST00000490398 RIGQ13278 110 aa11.83□□□□□ -0.52
COL9A3-214ENST00000490398 UBE2L6O14933 153 aa11.82□□□□□ -0.52
COL9A3-214ENST00000490398 TSHBP01222 138 aa11.82□□□□□ -0.52
COL9A3-214ENST00000490398 TMEM70Q9BUB7 260 aa11.82□□□□□ -0.52
COL9A3-214ENST00000490398 TMEM242Q9NWH2 141 aa11.82□□□□□ -0.52
COL9A3-214ENST00000490398 HERC1Q15751 4861 aa11.82□□□□□ -0.52
COL9A3-214ENST00000490398 APCSP02743 223 aa11.81□□□□□ -0.52
COL9A3-214ENST00000490398 PMCHP20382 165 aa11.81□□□□□ -0.52
COL9A3-214ENST00000490398 POLR2KP53803 58 aaKnown RBP11.81□□□□□ -0.52
COL9A3-214ENST00000490398 ST20Q9HBF5 79 aa11.81□□□□□ -0.52
COL9A3-214ENST00000490398 I3L3M4 83 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 PRSS1P07477 247 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 CAMPP49913 170 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 IFITM2Q01629 132 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 NRACQ8N912 160 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 MRAP2Q96G30 205 aa11.8□□□□□ -0.52
COL9A3-214ENST00000490398 ESDP10768 282 aa11.79□□□□□ -0.52
COL9A3-214ENST00000490398 MRPL51Q4U2R6 128 aaKnown RBP11.79□□□□□ -0.52
COL9A3-214ENST00000490398 FAM104BQ5XKR9 115 aa11.79□□□□□ -0.52
COL9A3-214ENST00000490398 MRPL54Q6P161 138 aaKnown RBP11.79□□□□□ -0.52
COL9A3-214ENST00000490398 Q6ZSA8 131 aa11.79□□□□□ -0.52
COL9A3-214ENST00000490398 IGKV3OR2-268A0A0C4DH90 116 aa11.78□□□□□ -0.52
COL9A3-214ENST00000490398 EPM2AB3EWF7 344 aa11.78□□□□□ -0.52
COL9A3-214ENST00000490398 FGF6P10767 208 aa11.78□□□□□ -0.52
COL9A3-214ENST00000490398 SRRM2Q9UQ35 2752 aaKnown RBP11.78□□□□□ -0.52
COL9A3-214ENST00000490398 RAB14P61106 215 aa11.77□□□□□ -0.53
COL9A3-214ENST00000490398 CLLU1Q5K131 121 aa11.77□□□□□ -0.53
COL9A3-214ENST00000490398 Q5VSD8 79 aa11.77□□□□□ -0.53
COL9A3-214ENST00000490398 RNASEKQ6P5S7 137 aaKnown RBP11.77□□□□□ -0.53
COL9A3-214ENST00000490398 FAT3Q8TDW7 4589 aa11.76□□□□□ -0.53
COL9A3-214ENST00000490398 TRBV27A0A0K0K1C4 114 aa11.76□□□□□ -0.53
COL9A3-214ENST00000490398 A0A1B0GXF2 115 aa11.76□□□□□ -0.53
COL9A3-214ENST00000490398 TRAV8-4A0A0B4J246 113 aa11.75□□□□□ -0.53
COL9A3-214ENST00000490398 AMMECR1LQ6DCA0 310 aa11.75□□□□□ -0.53
COL9A3-214ENST00000490398 GAGE12HA6NDE8 117 aa11.74□□□□□ -0.53
COL9A3-214ENST00000490398 H7C423 109 aa11.74□□□□□ -0.53
COL9A3-214ENST00000490398 C14orf177Q52M58 125 aa11.74□□□□□ -0.53
COL9A3-214ENST00000490398 SUMO2P61956 95 aaKnown RBP11.73□□□□□ -0.53
COL9A3-214ENST00000490398 VCYO14598 125 aa11.72□□□□□ -0.53
COL9A3-214ENST00000490398 SLPIP03973 132 aa11.72□□□□□ -0.53
COL9A3-214ENST00000490398 HBBP68871 147 aa11.72□□□□□ -0.53
COL9A3-214ENST00000490398 SCXQ7RTU7 201 aa11.72□□□□□ -0.53
COL9A3-214ENST00000490398 A0A1B0GW15 77 aa11.71□□□□□ -0.53
COL9A3-214ENST00000490398 CHCHD10Q8WYQ3 142 aaPredicted RBP11.71□□□□□ -0.53
COL9A3-214ENST00000490398 D6R8Y8 96 aa11.7□□□□□ -0.54
COL9A3-214ENST00000490398 ADCYAP1P18509 176 aa11.7□□□□□ -0.54
COL9A3-214ENST00000490398 CKS2P33552 79 aa11.7□□□□□ -0.54
COL9A3-214ENST00000490398 C15orf56Q8N910 161 aa11.7□□□□□ -0.54
COL9A3-214ENST00000490398 LRP1Q07954 4544 aaKnown RBP11.69□□□□□ -0.54
COL9A3-214ENST00000490398 C7orf77A4D0Y5 90 aa11.69□□□□□ -0.54
COL9A3-214ENST00000490398 TNFRSF6BO95407 300 aa11.69□□□□□ -0.54
COL9A3-214ENST00000490398 ZNF25P17030 456 aaPredicted RBP11.69□□□□□ -0.54
COL9A3-214ENST00000490398 C9orf163Q8N9P6 203 aa11.69□□□□□ -0.54
COL9A3-214ENST00000490398 OR5A1Q8NGJ0 315 aa11.69□□□□□ -0.54
COL9A3-214ENST00000490398 CDC42SE2Q9NRR3 84 aa11.69□□□□□ -0.54
COL9A3-214ENST00000490398 TRBV24-1A0A075B6N3 115 aa11.68□□□□□ -0.54
COL9A3-214ENST00000490398 hDV102S1A0JD36 115 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms