RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 HTN3P15516 51 aa15.2■□□□□ 0.02
SMC4-221ENST00000489573 COTL1Q14019 142 aa15.2■□□□□ 0.02
SMC4-221ENST00000489573 C2orf66Q6UXQ4 117 aa15.2■□□□□ 0.02
SMC4-221ENST00000489573 TOMM6Q96B49 74 aa15.2■□□□□ 0.02
SMC4-221ENST00000489573 PAX4O43316 350 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 C3orf79P0CE67 100 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 LINC00694P0DN24 101 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 GYPEP15421 78 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 C11orf45Q8TAV5 145 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 CYSLTR1Q9Y271 337 aa15.19■□□□□ 0.02
SMC4-221ENST00000489573 PYY3Q5JQD4 70 aa15.18■□□□□ 0.02
SMC4-221ENST00000489573 MAP1LC3CQ9BXW4 147 aa15.18■□□□□ 0.02
SMC4-221ENST00000489573 LINC01549A6NIU2 74 aa15.17■□□□□ 0.02
SMC4-221ENST00000489573 SMIM6P0DI80 62 aa15.17■□□□□ 0.02
SMC4-221ENST00000489573 JOSD1Q15040 202 aaPredicted RBP15.17■□□□□ 0.02
SMC4-221ENST00000489573 IFI27L1Q96BM0 104 aa15.17■□□□□ 0.02
SMC4-221ENST00000489573 VSIG2Q96IQ7 327 aa15.17■□□□□ 0.02
SMC4-221ENST00000489573 A0A0J9YY99 117 aa15.16■□□□□ 0.02
SMC4-221ENST00000489573 ATP5LO75964 103 aa15.16■□□□□ 0.02
SMC4-221ENST00000489573 Q6ZTC4 211 aa15.16■□□□□ 0.02
SMC4-221ENST00000489573 TRAV26-1A0A087WT03 109 aa15.15■□□□□ 0.02
SMC4-221ENST00000489573 NANOS2P60321 138 aaKnown RBP15.15■□□□□ 0.02
SMC4-221ENST00000489573 C20orf203Q8NBC4 194 aa15.15■□□□□ 0.02
SMC4-221ENST00000489573 SYS1-DBNDD2H3BUS1 97 aa15.15■□□□□ 0.02
SMC4-221ENST00000489573 SCGB3A1Q96QR1 104 aa15.15■□□□□ 0.02
SMC4-221ENST00000489573 CHCHD7Q9BUK0 85 aa15.15■□□□□ 0.02
SMC4-221ENST00000489573 RPL39P62891 51 aaKnown RBP15.14■□□□□ 0.01
SMC4-221ENST00000489573 DEFA6Q01524 100 aa15.14■□□□□ 0.01
SMC4-221ENST00000489573 SCGB1D1O95968 90 aa15.13■□□□□ 0.01
SMC4-221ENST00000489573 GTSF1LQ9H1H1 148 aa15.13■□□□□ 0.01
SMC4-221ENST00000489573 ATP6V0E2Q8NHE4 81 aa15.12■□□□□ 0.01
SMC4-221ENST00000489573 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.11■□□□□ 0.01
SMC4-221ENST00000489573 PET117Q6UWS5 81 aa15.11■□□□□ 0.01
SMC4-221ENST00000489573 NTM-AS1Q6ZSK4 140 aa15.11■□□□□ 0.01
SMC4-221ENST00000489573 ERASQ7Z444 233 aa15.11■□□□□ 0.01
SMC4-221ENST00000489573 H0Y8G0 127 aa15.11■□□□□ 0.01
SMC4-221ENST00000489573 Q8N976 141 aa15.11■□□□□ 0.01
SMC4-221ENST00000489573 NHLRC4P0CG21 123 aaPredicted RBP15.1■□□□□ 0.01
SMC4-221ENST00000489573 TMEM97Q5BJF2 176 aa15.1■□□□□ 0.01
SMC4-221ENST00000489573 SPATA12Q7Z6I5 190 aa15.1■□□□□ 0.01
SMC4-221ENST00000489573 TIMM17AQ99595 171 aa15.1■□□□□ 0.01
SMC4-221ENST00000489573 C20orf202A1L168 122 aa15.09■□□□□ 0.01
SMC4-221ENST00000489573 IGIPA6NJ69 53 aa15.09■□□□□ 0.01
SMC4-221ENST00000489573 LINC00518Q8N0U6 118 aa15.09■□□□□ 0.01
SMC4-221ENST00000489573 ICOSQ9Y6W8 199 aa15.09■□□□□ 0.01
SMC4-221ENST00000489573 TENM3Q9P273 2699 aa15.08■□□□□ 0.01
SMC4-221ENST00000489573 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.08■□□□□ 0
SMC4-221ENST00000489573 IGKV2-29A2NJV5 120 aaPredicted RBP15.08■□□□□ 0
SMC4-221ENST00000489573 MRPL23Q16540 153 aaKnown RBP15.08■□□□□ 0
SMC4-221ENST00000489573 Q6ZN92 141 aa15.08■□□□□ 0
SMC4-221ENST00000489573 TMEM141Q96I45 108 aa15.08■□□□□ 0
SMC4-221ENST00000489573 DEFB131BA0A096LNP1 70 aa15.07■□□□□ 0
SMC4-221ENST00000489573 H3BNG1 76 aa15.07■□□□□ 0
SMC4-221ENST00000489573 PRSS1P07477 247 aa15.07■□□□□ 0
SMC4-221ENST00000489573 C12orf57Q99622 126 aa15.07■□□□□ 0
SMC4-221ENST00000489573 TRBV25-1A0A075B6N4 114 aa15.07■□□□□ 0
SMC4-221ENST00000489573 A0A096LPF7 62 aa15.07■□□□□ 0
SMC4-221ENST00000489573 LINC01545Q5VT33 79 aa15.07■□□□□ 0
SMC4-221ENST00000489573 SH2D6Q7Z4S9 175 aa15.07■□□□□ 0
SMC4-221ENST00000489573 TMEM243Q9BU79 118 aa15.07■□□□□ 0
SMC4-221ENST00000489573 HUWE1Q7Z6Z7 4374 aaKnown RBP15.06■□□□□ 0
SMC4-221ENST00000489573 TRBV6-8A0A0A6YYG3 113 aa15.06■□□□□ 0
SMC4-221ENST00000489573 CDPF1Q6NVV7 123 aa15.06■□□□□ 0
SMC4-221ENST00000489573 SPANXA1Q9NS26 97 aa15.06■□□□□ 0
SMC4-221ENST00000489573 PYGO1Q9Y3Y4 419 aa15.06■□□□□ 0
SMC4-221ENST00000489573 TGP01266 2768 aa15.06■□□□□ 0
SMC4-221ENST00000489573 TRAV10A0A0B4J240 114 aa15.05■□□□□ -0
SMC4-221ENST00000489573 LGALS9CQ6DKI2 356 aa15.05■□□□□ -0
SMC4-221ENST00000489573 BAALCQ8WXS3 180 aa15.05■□□□□ -0
SMC4-221ENST00000489573 PRKDCP78527 4128 aaKnown RBP15.04■□□□□ -0
SMC4-221ENST00000489573 UBE2D4Q9Y2X8 147 aa15.04■□□□□ -0
SMC4-221ENST00000489573 UBE2L6O14933 153 aa15.02■□□□□ -0
SMC4-221ENST00000489573 NPSP0C0P6 89 aa15.02■□□□□ -0
SMC4-221ENST00000489573 TIMM21Q9BVV7 248 aa15.02■□□□□ -0
SMC4-221ENST00000489573 TRAV12-1A0A0B4J245 112 aa15.02□□□□□ -0.01
SMC4-221ENST00000489573 H7C423 109 aa15.02□□□□□ -0.01
SMC4-221ENST00000489573 ODF1Q14990 250 aa15.02□□□□□ -0.01
SMC4-221ENST00000489573 PMCHL2Q9BQD1 86 aa15.02□□□□□ -0.01
SMC4-221ENST00000489573 IGLV4-3A0A075B6K6 122 aa15.01□□□□□ -0.01
SMC4-221ENST00000489573 SMAGPQ0VAQ4 97 aa15.01□□□□□ -0.01
SMC4-221ENST00000489573 CEMP1Q6PRD7 247 aaPredicted RBP15.01□□□□□ -0.01
SMC4-221ENST00000489573 TEX43Q6ZNM6 134 aa15.01□□□□□ -0.01
SMC4-221ENST00000489573 OPRPNQ99935 248 aaPredicted RBP15.01□□□□□ -0.01
SMC4-221ENST00000489573 A0A087WX48 190 aa15□□□□□ -0.01
SMC4-221ENST00000489573 FGF6P10767 208 aa15□□□□□ -0.01
SMC4-221ENST00000489573 PAPPA-AS1Q5QFB9 102 aa15□□□□□ -0.01
SMC4-221ENST00000489573 MRPL52Q86TS9 123 aaKnown RBP15□□□□□ -0.01
SMC4-221ENST00000489573 PMVKQ15126 192 aa14.99□□□□□ -0.01
SMC4-221ENST00000489573 ATOH7Q8N100 152 aa14.99□□□□□ -0.01
SMC4-221ENST00000489573 CHCHD5Q9BSY4 110 aa14.99□□□□□ -0.01
SMC4-221ENST00000489573 DNAH9Q9NYC9 4486 aa14.99□□□□□ -0.01
SMC4-221ENST00000489573 PRSS29PA6NIE9 313 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 S100A12P80511 92 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 GAGE6Q13070 117 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 AMMECR1LQ6DCA0 310 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 DGAT2L7PQ6IED9 249 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 FAM104AQ969W3 186 aa14.98□□□□□ -0.01
SMC4-221ENST00000489573 CSDC2Q9Y534 153 aaKnown RBP14.98□□□□□ -0.01
SMC4-221ENST00000489573 MRPS36P82909 103 aaKnown RBP14.97□□□□□ -0.01
SMC4-221ENST00000489573 ZC2HC1BQ5TFG8 222 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms