RNA–Protein interactions for RNA: ENST00000488905.1

HDAC6-231, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 492 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-231	ENST00000488905	CHTF8	P0CG12	524 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	MT1HL1	P0DM35	61 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	RAB5C	P51148	216 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	WDR73	Q6P4I2	378 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	LYZL1	Q6UWQ5	148 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905		Q6ZRU5	148 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	SPACA4	Q8TDM5	124 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	RNF185	Q96GF1	192 aa		11.72	□□□□□ -0.53
HDAC6-231	ENST00000488905	TRBV20OR9-2	A0A075B6H5	130 aa		11.71	□□□□□ -0.53
HDAC6-231	ENST00000488905	IFNA1	P01562	189 aa		11.71	□□□□□ -0.53
HDAC6-231	ENST00000488905	AMT	P48728	403 aa		11.71	□□□□□ -0.53
HDAC6-231	ENST00000488905	MEF2B	Q02080	365 aa	Predicted RBP	11.71	□□□□□ -0.53
HDAC6-231	ENST00000488905	COTL1	Q14019	142 aa		11.71	□□□□□ -0.53
HDAC6-231	ENST00000488905		A0A087WYN8	130 aa		11.7	□□□□□ -0.54
HDAC6-231	ENST00000488905	PDE6D	O43924	150 aa		11.7	□□□□□ -0.54
HDAC6-231	ENST00000488905	NTF3	P20783	257 aa		11.7	□□□□□ -0.54
HDAC6-231	ENST00000488905	CTRL	P40313	264 aa		11.7	□□□□□ -0.54
HDAC6-231	ENST00000488905	SULT1A2	P50226	295 aa		11.7	□□□□□ -0.54
HDAC6-231	ENST00000488905	TEX46	H3BTG2	121 aa		11.69	□□□□□ -0.54
HDAC6-231	ENST00000488905	C15orf56	Q8N910	161 aa		11.69	□□□□□ -0.54
HDAC6-231	ENST00000488905	DPH3	Q96FX2	82 aa		11.68	□□□□□ -0.54
HDAC6-231	ENST00000488905	BIN3	Q9NQY0	253 aa		11.68	□□□□□ -0.54
HDAC6-231	ENST00000488905	C9orf62	Q8N4C0	152 aa		11.67	□□□□□ -0.54
HDAC6-231	ENST00000488905	CNFN	Q9BYD5	112 aa		11.67	□□□□□ -0.54
HDAC6-231	ENST00000488905	MED9	Q9NWA0	146 aa		11.67	□□□□□ -0.54
HDAC6-231	ENST00000488905	PLAC8	Q9NZF1	115 aa		11.67	□□□□□ -0.54
HDAC6-231	ENST00000488905	GAGE12H	A6NDE8	117 aa		11.66	□□□□□ -0.54
HDAC6-231	ENST00000488905	BCL2	P10415	239 aa		11.66	□□□□□ -0.54
HDAC6-231	ENST00000488905	EIF5AL1	Q6IS14	154 aa	Known RBP	11.66	□□□□□ -0.54
HDAC6-231	ENST00000488905	LRP2	P98164	4655 aa		11.66	□□□□□ -0.54
HDAC6-231	ENST00000488905	TRAV26-2	A0A0B4J265	109 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	IGKV3OR2-268	A0A0C4DH90	116 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	PHOX2A	O14813	284 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	TWIST1	Q15672	202 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	CFAP161	Q6P656	301 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	GATD1	Q8NB37	220 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	NUDT10	Q8NFP7	164 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	NUDT11	Q96G61	164 aa		11.65	□□□□□ -0.54
HDAC6-231	ENST00000488905	HIGD2B	Q4VC39	106 aa		11.64	□□□□□ -0.55
HDAC6-231	ENST00000488905	C7orf33	Q8WU49	177 aa		11.64	□□□□□ -0.55
HDAC6-231	ENST00000488905	RPP21	Q9H633	154 aa	Known RBP	11.64	□□□□□ -0.55
HDAC6-231	ENST00000488905	RPS10	P46783	165 aa	Known RBP	11.63	□□□□□ -0.55
HDAC6-231	ENST00000488905	COX6A2	Q02221	97 aa		11.63	□□□□□ -0.55
HDAC6-231	ENST00000488905		Q6ZNX1	250 aa		11.63	□□□□□ -0.55
HDAC6-231	ENST00000488905	NDUFS6	O75380	124 aa	Known RBP	11.62	□□□□□ -0.55
HDAC6-231	ENST00000488905	AMMECR1L	Q6DCA0	310 aa		11.62	□□□□□ -0.55
HDAC6-231	ENST00000488905	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.62	□□□□□ -0.55
HDAC6-231	ENST00000488905	RPL39L	Q96EH5	51 aa	Known RBP	11.62	□□□□□ -0.55
HDAC6-231	ENST00000488905	RNASE7	Q9H1E1	156 aa	Known RBP	11.62	□□□□□ -0.55
HDAC6-231	ENST00000488905	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.61	□□□□□ -0.55
HDAC6-231	ENST00000488905	GVQW2	A0A096LPI5	108 aa	Predicted RBP	11.61	□□□□□ -0.55
HDAC6-231	ENST00000488905	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.61	□□□□□ -0.55
HDAC6-231	ENST00000488905	NCR2	O95944	276 aa		11.61	□□□□□ -0.55
HDAC6-231	ENST00000488905	APCS	P02743	223 aa		11.61	□□□□□ -0.55
HDAC6-231	ENST00000488905	IGKV2-24	A0A0C4DH68	120 aa		11.6	□□□□□ -0.55
HDAC6-231	ENST00000488905		K7EN84	100 aa		11.6	□□□□□ -0.55
HDAC6-231	ENST00000488905	MAJIN	Q3KP22	176 aa		11.6	□□□□□ -0.55
HDAC6-231	ENST00000488905	RNASEK	Q6P5S7	137 aa	Known RBP	11.6	□□□□□ -0.55
HDAC6-231	ENST00000488905	PRSS3P2	Q8NHM4	247 aa		11.6	□□□□□ -0.55
HDAC6-231	ENST00000488905		H7C423	109 aa		11.59	□□□□□ -0.55
HDAC6-231	ENST00000488905	FGF6	P10767	208 aa		11.59	□□□□□ -0.55
HDAC6-231	ENST00000488905	SDHAF1	A6NFY7	115 aa		11.58	□□□□□ -0.56
HDAC6-231	ENST00000488905	TAGLN2	P37802	199 aa	Known RBP	11.58	□□□□□ -0.56
HDAC6-231	ENST00000488905	PRR3	P79522	188 aa	Known RBP	11.58	□□□□□ -0.56
HDAC6-231	ENST00000488905	SMIM15	Q7Z3B0	74 aa		11.58	□□□□□ -0.56
HDAC6-231	ENST00000488905	GTSF1	Q8WW33	167 aa		11.58	□□□□□ -0.56
HDAC6-231	ENST00000488905	ZNF25	P17030	456 aa	Predicted RBP	11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	FOXA3	P55318	350 aa	Predicted RBP	11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	FOXI1	Q12951	378 aa		11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	TEX261	Q6UWH6	196 aa		11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	STPG4	Q8N801	248 aa		11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	OCC1	Q8TAD7	63 aa		11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905	RNF213	Q63HN8	5207 aa		11.57	□□□□□ -0.56
HDAC6-231	ENST00000488905		A0A096LNI7	61 aa		11.56	□□□□□ -0.56
HDAC6-231	ENST00000488905	LCE2D	Q5TA82	110 aa	Predicted RBP	11.56	□□□□□ -0.56
HDAC6-231	ENST00000488905	SLC51B	Q86UW2	128 aa		11.56	□□□□□ -0.56
HDAC6-231	ENST00000488905	OR5A1	Q8NGJ0	315 aa		11.55	□□□□□ -0.56
HDAC6-231	ENST00000488905	XCL1	P47992	114 aa		11.54	□□□□□ -0.56
HDAC6-231	ENST00000488905		I3L3M4	83 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	TCTE3	Q8IZS6	198 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	LYPD6B	Q8NI32	183 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	TMEM101	Q96IK0	257 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	BTF3L4	Q96K17	158 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	LINC01600	Q96MT4	127 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	PKIG	Q9Y2B9	76 aa		11.53	□□□□□ -0.56
HDAC6-231	ENST00000488905	TRBV6-5	A0A0K0K1A5	114 aa		11.52	□□□□□ -0.57
HDAC6-231	ENST00000488905	FAM231B	A6NCW3	169 aa		11.52	□□□□□ -0.57
HDAC6-231	ENST00000488905	GATC	O43716	136 aa	Known RBP	11.52	□□□□□ -0.57
HDAC6-231	ENST00000488905	PMCH	P20382	165 aa		11.52	□□□□□ -0.57
HDAC6-231	ENST00000488905	LINC00474	Q9P2X8	69 aa		11.52	□□□□□ -0.57
HDAC6-231	ENST00000488905	IGHV1-58	A0A0C4DH39	117 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905	LINC00959	A0A1B0GUT2	108 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905	CCL25	O15444	150 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905	FAM231D	Q6ZW35	169 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905	MRAP2	Q96G30	205 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905	CARD19	Q96LW7	228 aa		11.51	□□□□□ -0.57
HDAC6-231	ENST00000488905		A8MWL6	223 aa		11.5	□□□□□ -0.57
HDAC6-231	ENST00000488905	TMEM250	H0YL14	139 aa		11.5	□□□□□ -0.57
HDAC6-231	ENST00000488905	TSHB	P01222	138 aa		11.5	□□□□□ -0.57
HDAC6-231	ENST00000488905	ESD	P10768	282 aa		11.5	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms