RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 A0A1B0GWB2 263 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 IGLL5B9A064 214 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 GAS8-AS1O95177 125 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 PMVKQ15126 192 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 C12orf74Q32Q52 190 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 SCGB1D4Q6XE38 83 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 BAALCQ8WXS3 180 aa6.65□□□□□ -1.34
COL12A1-208ENST00000486533 TRGV11A0A075B6L2 103 aa6.65□□□□□ -1.35
COL12A1-208ENST00000486533 TRBV7-3A0A075B6L6 115 aa6.65□□□□□ -1.35
COL12A1-208ENST00000486533 RRN3P1Q2M238 152 aa6.65□□□□□ -1.35
COL12A1-208ENST00000486533 UNQ9165/PRO28630Q6UXU0 137 aa6.65□□□□□ -1.35
COL12A1-208ENST00000486533 FOXI2Q6ZQN5 318 aa6.65□□□□□ -1.35
COL12A1-208ENST00000486533 ZNF815PA8K554 130 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 J3KRW8 73 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 LGALS9O00182 355 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 SCGB1A1P11684 91 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 TRPT1Q86TN4 253 aaKnown RBP6.64□□□□□ -1.35
COL12A1-208ENST00000486533 PHLDA1Q8WV24 401 aaPredicted RBP6.64□□□□□ -1.35
COL12A1-208ENST00000486533 PRADC1Q9BSG0 188 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 VCX2Q9H322 139 aa6.64□□□□□ -1.35
COL12A1-208ENST00000486533 PRSS29PA6NIE9 313 aa6.63□□□□□ -1.35
COL12A1-208ENST00000486533 C11orf86A6NJI1 115 aa6.63□□□□□ -1.35
COL12A1-208ENST00000486533 F5H697 171 aa6.63□□□□□ -1.35
COL12A1-208ENST00000486533 RNASE3P12724 160 aaKnown RBP6.63□□□□□ -1.35
COL12A1-208ENST00000486533 SYNJ2BPP57105 145 aa6.63□□□□□ -1.35
COL12A1-208ENST00000486533 RPL24P83731 157 aaKnown RBP6.63□□□□□ -1.35
COL12A1-208ENST00000486533 SRSF9Q13242 221 aaKnown RBP eCLIP6.63□□□□□ -1.35
COL12A1-208ENST00000486533 RPL39LQ96EH5 51 aaKnown RBP6.63□□□□□ -1.35
COL12A1-208ENST00000486533 SPANXB1Q9NS25 103 aaPredicted RBP6.63□□□□□ -1.35
COL12A1-208ENST00000486533 TP53TG1Q9Y2A0 90 aa6.63□□□□□ -1.35
COL12A1-208ENST00000486533 IGLV1-51P01701 117 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 TRBV12-3P01733 135 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 CD7P09564 240 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 GAGE13Q4V321 117 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 ZFP2Q6ZN57 461 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 SBSPONQ8IVN8 264 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 ATP6V0E2Q8NHE4 81 aa6.62□□□□□ -1.35
COL12A1-208ENST00000486533 TRBV27A0A0K0K1C4 114 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 POLR2KP53803 58 aaKnown RBP6.61□□□□□ -1.35
COL12A1-208ENST00000486533 SUMO4Q6EEV6 95 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 MAPKAPK5-AS1Q8N8E1 139 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 DCANP1Q8TF63 244 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 C9orf85Q96MD7 179 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 NAA38Q9BRA0 125 aaKnown RBP6.61□□□□□ -1.35
COL12A1-208ENST00000486533 MRPL16Q9NX20 251 aaKnown RBP6.61□□□□□ -1.35
COL12A1-208ENST00000486533 KIF25-AS1Q9Y6Z4 181 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 TRBV20-1A0A075B6N2 111 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 IGHV1OR15-1A0A075B7D0 117 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 SDHAF1A6NFY7 115 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 K7ERJ3 54 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 GNRH2O43555 120 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 IGHV4-30-4P0DP06 118 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 LGALS3P17931 250 aaKnown RBP6.61□□□□□ -1.35
COL12A1-208ENST00000486533 CRYBA4P53673 196 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 ZNF56Q15929 161 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 TTTY13Q9BZ97 58 aa6.61□□□□□ -1.35
COL12A1-208ENST00000486533 RYR3Q15413 4870 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 TRAV2A0A0B4J234 112 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 A0A0J9YX75 114 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 PIK3CD-AS1Q5SR53 167 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 PLEKHB2Q96CS7 222 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 EDA2RQ9HAV5 297 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 PEMTQ9UBM1 199 aa6.6□□□□□ -1.35
COL12A1-208ENST00000486533 IGKV3-7A0A075B6H7 116 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 TRAV12-3A0A0B4J271 114 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 IGHV3-16A0A0C4DH30 117 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 IGIPA6NJ69 53 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 I3L3M4 83 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 K7EQG2 157 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 NFE4Q86UQ8 179 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 Q8N1Y9 231 aa6.59□□□□□ -1.35
COL12A1-208ENST00000486533 KRTAP4-8A0A0G2JLE6 195 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 F6UB75 175 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 C3orf84H3BNL1 204 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 LEPROTO15243 131 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 UBE2D1P51668 147 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 LINC00315P59091 139 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 ZNF876PQ49A33 203 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 TMEM170BQ5T4T1 132 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 DYNLRB2Q8TF09 96 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 SIGMAR1Q99720 223 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 MDFICQ9P1T7 246 aa6.58□□□□□ -1.36
COL12A1-208ENST00000486533 IGLV4-69A0A075B6H9 119 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.57□□□□□ -1.36
COL12A1-208ENST00000486533 TEX48A0A1B0GUV7 120 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 TMEM238C9JI98 176 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 H3BMG7 143 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 CD300EQ496F6 205 aaPredicted RBP6.57□□□□□ -1.36
COL12A1-208ENST00000486533 Q6ZQT7 251 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 MUC7Q8TAX7 377 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 HUWE1Q7Z6Z7 4374 aaKnown RBP6.57□□□□□ -1.36
COL12A1-208ENST00000486533 A8MWV9 139 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 J3QQQ9 107 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 RHODO00212 210 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 ZNF688P0C7X2 276 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 FAM74A4Q5TZK3 123 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 PTH2Q96A98 100 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 TM2D3Q9BRN9 247 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 C19orf73Q9NVV2 129 aa6.57□□□□□ -1.36
COL12A1-208ENST00000486533 A0A087WWL8 130 aa6.56□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms