RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 NUP35Q8NFH5 326 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 GTSF1Q8WW33 167 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 FRZBQ92765 325 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 UBE2WQ96B02 151 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 MRAP2Q96G30 205 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 TMEM101Q96IK0 257 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 TMEM243Q9BU79 118 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 CHCHD7Q9BUK0 85 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 KLK12Q9UKR0 248 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 V9GYV3 84 aa5.49□□□□□ -1.53
USP40-216ENST00000485943 TRAV26-2A0A0B4J265 109 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 GAGE12HA6NDE8 117 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 CKS2P33552 79 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 GAGE6Q13070 117 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 DGAT2L7PQ6IED9 249 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 TMEM18Q96B42 140 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 KIR2DL4Q99706 377 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 TMEM191AQ9H0A3 160 aa5.48□□□□□ -1.53
USP40-216ENST00000485943 SMIM27A0A1W2PRY6 76 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 C16orf90A8MZG2 172 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 C9JQL5 133 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 M0QY20 66 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 LAGE3Q14657 143 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 AMN1Q8IY45 258 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 CNFNQ9BYD5 112 aa5.47□□□□□ -1.53
USP40-216ENST00000485943 RYR2Q92736 4967 aa5.46□□□□□ -1.53
USP40-216ENST00000485943 IGKV3OR2-268A0A0C4DH90 116 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 SDHAF1A6NFY7 115 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 IBA57-AS1B1ANH7 110 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 I3L3M4 83 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 RTL8CO15255 209 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 RAB5AP20339 215 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 FOXA3P55318 350 aaPredicted RBP5.46□□□□□ -1.54
USP40-216ENST00000485943 ATP5L2Q7Z4Y8 100 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 NIT1Q86X76 327 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 DEFB104AQ8WTQ1 72 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 KRTAP3-1Q9BYR8 98 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 CTDSP1Q9GZU7 261 aa5.46□□□□□ -1.54
USP40-216ENST00000485943 TMEM218A2RU14 115 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 LINC00862A6NCI5 91 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 TCAPO15273 167 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 NCR2O95944 276 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 HLA-DQA1P01909 254 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 CLPSL2Q6UWE3 100 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 SPATA12Q7Z6I5 190 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 GATD1Q8NB37 220 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 RPL39LQ96EH5 51 aaKnown RBP5.45□□□□□ -1.54
USP40-216ENST00000485943 SEC11CQ9BY50 192 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 RPS10P5Q9NQ39 176 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 Q9UF83 564 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 KIF25-AS1Q9Y6Z4 181 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 HYDINQ4G0P3 5121 aa5.45□□□□□ -1.54
USP40-216ENST00000485943 RYR3Q15413 4870 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 VCYO14598 125 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 TRIAP1O43715 76 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 PPBPP02775 128 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 LINC00694P0DN24 101 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 RAB4AP20338 218 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 IQCJQ1A5X6 159 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 C14orf177Q52M58 125 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 MPV17L2Q567V2 206 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 ATRAIDQ6UW56 229 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 ZNF575Q86XF7 245 aa5.44□□□□□ -1.54
USP40-216ENST00000485943 DYNC2H1Q8NCM8 4307 aaKnown RBP5.43□□□□□ -1.54
USP40-216ENST00000485943 IGLV5-52A0A0A0MRZ9 124 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 C7orf77A4D0Y5 90 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 D6R8Y8 96 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 SMKR1H3BMG3 65 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 SNAPINO95295 136 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 APOC3P02656 99 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 SUMO2P61956 95 aaKnown RBP5.43□□□□□ -1.54
USP40-216ENST00000485943 RBX1P62877 108 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 IFITM2Q01629 132 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 RHEBQ15382 184 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 MIAQ16674 131 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 LCE3BQ5TA77 95 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 FAM104BQ5XKR9 115 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 ORMDL3Q8N138 153 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 LINC00269Q8N2A0 174 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 Q8N976 141 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 OR5A1Q8NGJ0 315 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 KRTAP1-5Q9BYS1 174 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 TMEM242Q9NWH2 141 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 SACSQ9NZJ4 4579 aa5.43□□□□□ -1.54
USP40-216ENST00000485943 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.42□□□□□ -1.54
USP40-216ENST00000485943 IGKV2-29A2NJV5 120 aaPredicted RBP5.42□□□□□ -1.54
USP40-216ENST00000485943 H7C423 109 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 REG3AQ06141 175 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 TMEM136Q6ZRR5 245 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 SVBPQ8N300 66 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 PRELID3AQ96N28 172 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 MAP1LC3AQ9H492 121 aa5.42□□□□□ -1.54
USP40-216ENST00000485943 IGLV10-54A0A075B6I4 117 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.41□□□□□ -1.54
USP40-216ENST00000485943 TRAV8-4A0A0B4J246 113 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 LOC389332A0A1B0GUA5 103 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 LECT2O14960 151 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 ZNF25P17030 456 aaPredicted RBP5.41□□□□□ -1.54
USP40-216ENST00000485943 SS18Q15532 418 aa5.41□□□□□ -1.54
USP40-216ENST00000485943 COX19Q49B96 90 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms