RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 IGHV3-30P01768 117 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 IGHV3-30-5P0DP03 117 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 SMCR5Q8TEV8 140 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 UBE2WQ96B02 151 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 TRBV10-2A0A0K0K1G8 114 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 GATA1P15976 413 aaPredicted RBP5.73□□□□□ -1.49
USP4-211ENST00000485450 LINC01620Q4KN68 170 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 NEXN-AS1Q8NBZ9 246 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 IL17DQ8TAD2 202 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 HIST1H4AP62805 103 aaKnown RBP5.73□□□□□ -1.49
USP4-211ENST00000485450 ATXN8Q156A1 80 aa5.73□□□□□ -1.49
USP4-211ENST00000485450 F8P00451 2351 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 NAV3Q8IVL0 2385 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 hADV29S1A0JD25 119 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 J3QQQ9 107 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 COX7CP15954 63 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 ZNF22P17026 224 aaPredicted RBP5.72□□□□□ -1.49
USP4-211ENST00000485450 ZNF56Q15929 161 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 DEFB121Q5J5C9 76 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 FAM19A1Q7Z5A9 133 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 WFDC9Q8NEX5 89 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 FAM110DQ8TAY7 271 aaPredicted RBP5.72□□□□□ -1.49
USP4-211ENST00000485450 C17orf77Q96MU5 243 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 FAM236DA0A1B0GTK5 79 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 FAM236CP0DP71 79 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 COX7A1P24310 79 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 LINC00527Q9UJ94 153 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 V9GYY9 64 aa5.72□□□□□ -1.49
USP4-211ENST00000485450 IGHV3-33P01772 117 aa5.71□□□□□ -1.49
USP4-211ENST00000485450 PLGLAQ15195 96 aa5.71□□□□□ -1.49
USP4-211ENST00000485450 C10orf55Q5SWW7 151 aa5.71□□□□□ -1.49
USP4-211ENST00000485450 NRACQ8N912 160 aa5.71□□□□□ -1.49
USP4-211ENST00000485450 ATP5G1P05496 136 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 LYZP61626 148 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 SLC25A29Q8N8R3 303 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 CREBBPQ92793 2442 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 GAGE2AQ6NT46 116 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 Q6ZS46 218 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 C9orf85Q96MD7 179 aa5.71□□□□□ -1.5
USP4-211ENST00000485450 NDPQ00604 133 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 PMVKQ15126 192 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 SDIM1Q6ZPB5 146 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 LINC01561Q8N1V8 128 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 TMEM263Q8WUH6 116 aaKnown RBP5.7□□□□□ -1.5
USP4-211ENST00000485450 SHANK2-AS3Q9BTD1 123 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 M0R3E3 92 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 KLHL30-AS1Q8NEE0 82 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 TOMM6Q96B49 74 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 A0A0B4J2C4 111 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 TMEM170BQ5T4T1 132 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 C4orf3Q8WVX3 66 aa5.7□□□□□ -1.5
USP4-211ENST00000485450 ROS1P08922 2347 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 ABCA1O95477 2261 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 NIPBLQ6KC79 2804 aaeCLIP5.69□□□□□ -1.5
USP4-211ENST00000485450 H3BRN7 92 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 ZNF80P51504 273 aaPredicted RBP5.69□□□□□ -1.5
USP4-211ENST00000485450 SCGB3A1Q96QR1 104 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 DNAH9Q9NYC9 4486 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 IGHV3OR16-10A0A075B7F0 116 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 A0A087WWL8 130 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 PRB4P10163 310 aaPredicted RBP5.69□□□□□ -1.5
USP4-211ENST00000485450 PFN2P35080 140 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 ERCC8Q13216 396 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 PDE6HQ13956 83 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 H3BT86 120 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 EGFEM1PQ0D2K5 195 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 C5orf38Q86SI9 138 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 LINC00482Q8N8I6 264 aa5.69□□□□□ -1.5
USP4-211ENST00000485450 TMEM258P61165 79 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 BLCAPP62952 87 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 ORMDL2Q53FV1 153 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 C2orf82Q6UX34 121 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 ZNF491Q8N8L2 437 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 UBE2E2Q96LR5 201 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 DPH3P1Q9H4G8 78 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 TENM1Q9UKZ4 2725 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 TRBV30A0A0K0K1B3 111 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 A0A0U1RRA0 63 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 NSUN5P1Q3KNT7 163 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 IGLV11-55A0A075B6I3 123 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 FAM223BA6NKX1 122 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 PRB3Q04118 309 aaPredicted RBP5.68□□□□□ -1.5
USP4-211ENST00000485450 ZNF415Q09FC8 603 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 FAM223AQ8IWN6 122 aa5.68□□□□□ -1.5
USP4-211ENST00000485450 IGHV3-21A0A0B4J1V1 117 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 TRAV41A0A0B4J266 112 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 H7C423 109 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 ACYP1P07311 99 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 HERVK_113P61574 105 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 SMIM2Q9BVW6 85 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 METTL26Q96S19 204 aa5.67□□□□□ -1.5
USP4-211ENST00000485450 F8W735 103 aaPredicted RBP5.66□□□□□ -1.5
USP4-211ENST00000485450 TRGV3P03979 118 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 PAPPA-AS1Q5QFB9 102 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 AMELXQ99217 191 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 AGPAT4-IT1Q9H0P7 198 aa5.66□□□□□ -1.5
USP4-211ENST00000485450 PRKDCP78527 4128 aaKnown RBP5.66□□□□□ -1.5
USP4-211ENST00000485450 MAP1AP78559 2803 aaPredicted RBP5.66□□□□□ -1.5
USP4-211ENST00000485450 IGKV2-40A0A087WW87 121 aaPredicted RBP5.66□□□□□ -1.5
USP4-211ENST00000485450 IGKV2D-40P01614 121 aaPredicted RBP5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 76.6 ms