RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 UBE2D3P61077 147 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 UBE2D2P62837 147 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 SPATA12Q7Z6I5 190 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 DAZ4Q86SG3 579 aaKnown RBP11.31□□□□□ -0.6
TRIM54-203ENST00000485306 NFE4Q86UQ8 179 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 NRACQ8N912 160 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 ST20Q9HBF5 79 aa11.31□□□□□ -0.6
TRIM54-203ENST00000485306 DAZ3Q9NR90 486 aaKnown RBP11.31□□□□□ -0.6
TRIM54-203ENST00000485306 SMKR1H3BMG3 65 aa11.3□□□□□ -0.6
TRIM54-203ENST00000485306 TNFRSF6BO95407 300 aa11.3□□□□□ -0.6
TRIM54-203ENST00000485306 TIRAPP58753 221 aa11.3□□□□□ -0.6
TRIM54-203ENST00000485306 RPL32P62910 135 aaKnown RBP11.3□□□□□ -0.6
TRIM54-203ENST00000485306 ATP6V0E2Q8NHE4 81 aa11.3□□□□□ -0.6
TRIM54-203ENST00000485306 RPL39LQ96EH5 51 aaKnown RBP11.3□□□□□ -0.6
TRIM54-203ENST00000485306 EREGO14944 169 aa11.29□□□□□ -0.6
TRIM54-203ENST00000485306 SUMO2P61956 95 aaKnown RBP11.29□□□□□ -0.6
TRIM54-203ENST00000485306 TMEM97Q5BJF2 176 aa11.29□□□□□ -0.6
TRIM54-203ENST00000485306 Q9UF83 564 aa11.29□□□□□ -0.6
TRIM54-203ENST00000485306 SDHAF1A6NFY7 115 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 PRSS47A8MTI9 375 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 GAS8-AS1O95177 125 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 NPYP01303 97 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 KIAA1644Q3SXP7 199 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 ALKBH7Q9BT30 221 aaPredicted RBP11.28□□□□□ -0.6
TRIM54-203ENST00000485306 DNAH11Q96DT5 4516 aa11.28□□□□□ -0.6
TRIM54-203ENST00000485306 VCYO14598 125 aa11.27□□□□□ -0.61
TRIM54-203ENST00000485306 POLR2KP53803 58 aaKnown RBP11.27□□□□□ -0.61
TRIM54-203ENST00000485306 WFDC10BQ8IUB3 73 aa11.27□□□□□ -0.61
TRIM54-203ENST00000485306 C10orf126Q8N4M7 172 aa11.27□□□□□ -0.61
TRIM54-203ENST00000485306 TMEM70Q9BUB7 260 aa11.27□□□□□ -0.61
TRIM54-203ENST00000485306 GTSF1LQ9H1H1 148 aa11.27□□□□□ -0.61
TRIM54-203ENST00000485306 TRAV8-6A0A0B4J262 113 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 TRBV27A0A0K0K1C4 114 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 I3L3M4 83 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 J3QL48 77 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 TCAPO15273 167 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 TRGC2P03986 189 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 DNAH10OSP0CZ25 163 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 Q6ZRN7 208 aaPredicted RBP11.26□□□□□ -0.61
TRIM54-203ENST00000485306 MAP1LC3AQ9H492 121 aa11.26□□□□□ -0.61
TRIM54-203ENST00000485306 CDK2AP2O75956 126 aa11.25□□□□□ -0.61
TRIM54-203ENST00000485306 IGHV3-38A0A0C4DH36 116 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 PMCHP20382 165 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 COTL1Q14019 142 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 KIR2DL4Q99706 377 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 SMIM2Q9BVW6 85 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 KRTAP17-1Q9BYP8 105 aa11.24□□□□□ -0.61
TRIM54-203ENST00000485306 DYNC1H1Q14204 4646 aaKnown RBP11.24□□□□□ -0.61
TRIM54-203ENST00000485306 K7EMI3 77 aa11.23□□□□□ -0.61
TRIM54-203ENST00000485306 NXT2Q9NPJ8 142 aaKnown RBP11.23□□□□□ -0.61
TRIM54-203ENST00000485306 PGPEP1Q9NXJ5 209 aa11.23□□□□□ -0.61
TRIM54-203ENST00000485306 KRTAP10-2P60368 255 aa11.22□□□□□ -0.61
TRIM54-203ENST00000485306 LELP1Q5T871 98 aa11.22□□□□□ -0.61
TRIM54-203ENST00000485306 Q8N8P6 123 aa11.22□□□□□ -0.61
TRIM54-203ENST00000485306 TRBV6-8A0A0A6YYG3 113 aa11.21□□□□□ -0.61
TRIM54-203ENST00000485306 FCER1GP30273 86 aa11.2□□□□□ -0.62
TRIM54-203ENST00000485306 IQCJQ1A5X6 159 aa11.2□□□□□ -0.62
TRIM54-203ENST00000485306 LINC01556Q5JQF7 62 aa11.2□□□□□ -0.62
TRIM54-203ENST00000485306 TRBV25-1A0A075B6N4 114 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 IGHV1-24A0A0C4DH33 117 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 LOC389332A0A1B0GUA5 103 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 RAB5BP61020 215 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 PKIAP61925 76 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 CDPF1Q6NVV7 123 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 PRSS3P2Q8NHM4 247 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 C18orf32Q8TCD1 76 aa11.19□□□□□ -0.62
TRIM54-203ENST00000485306 PSCAO43653 123 aa11.18□□□□□ -0.62
TRIM54-203ENST00000485306 TSHBP01222 138 aa11.18□□□□□ -0.62
TRIM54-203ENST00000485306 AMTP48728 403 aa11.18□□□□□ -0.62
TRIM54-203ENST00000485306 Q0VG73 95 aa11.18□□□□□ -0.62
TRIM54-203ENST00000485306 A0A087WTM6 91 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 C1orf196B1AJZ1 125 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 IBA57-AS1B1ANH7 110 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 G0S2P27469 103 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 IFI27P40305 119 aaPredicted RBP11.17□□□□□ -0.62
TRIM54-203ENST00000485306 ORMDL2Q53FV1 153 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 NTM-AS1Q6ZSK4 140 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 FA2HQ7L5A8 372 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 TMEM243Q9BU79 118 aa11.17□□□□□ -0.62
TRIM54-203ENST00000485306 LINC01546A6NGU7 62 aa11.16□□□□□ -0.62
TRIM54-203ENST00000485306 H7C423 109 aa11.16□□□□□ -0.62
TRIM54-203ENST00000485306 MAPKAPK5-AS1Q8N8E1 139 aa11.16□□□□□ -0.62
TRIM54-203ENST00000485306 TMEM18Q96B42 140 aa11.16□□□□□ -0.62
TRIM54-203ENST00000485306 IGHV3-30P01768 117 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 IGHV3-33P01772 117 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 IGHV3-30-3P0DP02 117 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 IGHV3-30-5P0DP03 117 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 ESDP10768 282 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 SMAGPQ0VAQ4 97 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 LAGE3Q14657 143 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 CHCHD7Q9BUK0 85 aa11.15□□□□□ -0.62
TRIM54-203ENST00000485306 HIST1H2BKO60814 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BJP06899 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 LINC00614P0C842 121 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BOP23527 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BBP33778 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BDP58876 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST1H2BCP62807 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST2H2BEQ16778 126 aa11.14□□□□□ -0.63
TRIM54-203ENST00000485306 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms