RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 SPTBN4Q9H254 2564 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 OVOS2A0A0J9YW53 1432 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 OVOS2Q6IE36 1432 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 J3QR89 54 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 IL5P05113 134 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 NBEAP1P0C6P0 100 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 CBLN1P23435 193 aa-0.69□□□□□ -2.52
VPS50-217ENST00000485140 MRPL40Q9NQ50 206 aaKnown RBP-0.69□□□□□ -2.52
VPS50-217ENST00000485140 EPPK1P58107 5090 aaKnown RBP-0.69□□□□□ -2.52
VPS50-217ENST00000485140 SYNJ1O43426 1573 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 C10orf71Q711Q0 1435 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 STAB2Q8WWQ8 2551 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 USF3Q68DE3 2245 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 ATRQ13535 2644 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 FXYD6-FXYD2A0A087WZ82 144 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 CLPSL1A2RUU4 121 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 SPRR2BP35325 72 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 HIST1H1AQ02539 215 aaPredicted RBP-0.7□□□□□ -2.52
VPS50-217ENST00000485140 SPTSSBQ8NFR3 76 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 SMIM4Q8WVI0 70 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 AIF1LQ9BQI0 150 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 BCL9LQ86UU0 1499 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 KDM3BQ7LBC6 1761 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 TEP1Q99973 2627 aaKnown RBP-0.7□□□□□ -2.52
VPS50-217ENST00000485140 GVINP1Q7Z2Y8 2422 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 ARHGEF10O15013 1369 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 TMEM2Q9UHN6 1383 aa-0.7□□□□□ -2.52
VPS50-217ENST00000485140 DISP2A7MBM2 1401 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 K7EQZ3 153 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 BCE1O60756 84 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 SNCGO76070 127 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 RRAS2P62070 204 aaPredicted RBP-0.71□□□□□ -2.52
VPS50-217ENST00000485140 HAMPP81172 84 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 KRTAP19-8Q3LI54 63 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 TP53AIP1Q9HCN2 124 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 GSKIPQ9P0R6 139 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 R4GMQ9 66 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 ERCC6L2Q5T890 1561 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 CDK5RAP2Q96SN8 1893 aa-0.71□□□□□ -2.52
VPS50-217ENST00000485140 PLXNB2O15031 1838 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 FAM236AA0A1B0GUQ0 79 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 FAM236BA0A1B0GV22 79 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 M0R129 80 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 NCR2O95944 276 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 IGLC6P0CF74 106 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 CCL8P80075 99 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 SPTSSAQ969W0 71 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 LINC00312Q9Y6C7 94 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 HIVEP1P15822 2718 aa-0.72□□□□□ -2.52
VPS50-217ENST00000485140 EP300Q09472 2414 aaPredicted RBP-0.73□□□□□ -2.53
VPS50-217ENST00000485140 CHD8Q9HCK8 2581 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 LOC730098B7Z3J9 87 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 NDUFB6O95139 128 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 CCL18P55774 89 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 PIGYQ3MUY2 71 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 SCIMPQ6UWF3 145 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 Q6ZUT4 128 aa-0.73□□□□□ -2.53
VPS50-217ENST00000485140 SETD2Q9BYW2 2564 aaPredicted RBP-0.73□□□□□ -2.53
VPS50-217ENST00000485140 TRBV6-1A0A0K0K1D8 114 aa-0.74□□□□□ -2.53
VPS50-217ENST00000485140 PPP1R17O96001 155 aa-0.74□□□□□ -2.53
VPS50-217ENST00000485140 SCGB1A1P11684 91 aa-0.74□□□□□ -2.53
VPS50-217ENST00000485140 LRP6O75581 1613 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 PIGBOS1A0A0B4J2F0 54 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 CTXND1A0A1B0GTU2 59 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 M0R2Z0 102 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 TSPAN19P0C672 248 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 S100A7L2Q5SY68 101 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 SPAG11AQ6PDA7 123 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 TAC4Q86UU9 113 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 SEC11CQ9BY50 192 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 SMIM3Q9BZL3 60 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 PXDNQ92626 1479 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 ADGRB1O14514 1584 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 LRRC37A2A6NM11 1700 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 NWD2Q9ULI1 1742 aa-0.75□□□□□ -2.53
VPS50-217ENST00000485140 MYH8P13535 1937 aa-0.76□□□□□ -2.53
VPS50-217ENST00000485140 MYO7BQ6PIF6 2116 aa-0.76□□□□□ -2.53
VPS50-217ENST00000485140 SONP18583 2426 aaKnown RBP-0.76□□□□□ -2.53
VPS50-217ENST00000485140 M0R135 149 aa-0.76□□□□□ -2.53
VPS50-217ENST00000485140 AQP10Q96PS8 301 aa-0.76□□□□□ -2.53
VPS50-217ENST00000485140 MYH6P13533 1939 aa-0.76□□□□□ -2.53
VPS50-217ENST00000485140 CASKIN1Q8WXD9 1431 aa-0.77□□□□□ -2.53
VPS50-217ENST00000485140 K7ERU9 68 aa-0.77□□□□□ -2.53
VPS50-217ENST00000485140 PITX3O75364 302 aa-0.77□□□□□ -2.53
VPS50-217ENST00000485140 LINC00694P0DN24 101 aa-0.77□□□□□ -2.53
VPS50-217ENST00000485140 GUCA1AP43080 201 aaPredicted RBP-0.77□□□□□ -2.53
VPS50-217ENST00000485140 COX17Q14061 63 aa-0.77□□□□□ -2.53
VPS50-217ENST00000485140 LAMA5O15230 3695 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 WDR7Q9Y4E6 1490 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 RYR2Q92736 4967 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 I3L2K1 104 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 SIX6O95475 246 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 COX6B1P14854 86 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 ALX1Q15699 326 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 KCNRGQ8N5I3 272 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 AGPAT4-IT1Q9H0P7 198 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 PRDM2Q13029 1718 aa-0.78□□□□□ -2.53
VPS50-217ENST00000485140 IFT140Q96RY7 1462 aa-0.79□□□□□ -2.54
VPS50-217ENST00000485140 PRG4Q92954 1404 aaPredicted RBP-0.79□□□□□ -2.54
VPS50-217ENST00000485140 PRKDCP78527 4128 aaKnown RBP-0.79□□□□□ -2.54
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms