RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 LAMA1P25391 3075 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 LAMC3Q9Y6N6 1575 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 GVINP1Q7Z2Y8 2422 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 ZNF815PA8K554 130 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 ZZEF1O43149 2961 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 UBE2D1P51668 147 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 CKS1BP61024 79 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 MMGT1Q8N4V1 131 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 CYP4F30PQ9H0H9 118 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 BATF3Q9NR55 127 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 MAP2P11137 1827 aaKnown RBP-0.3□□□□□ -2.46
VPS50-216ENST00000484954 WDR87Q6ZQQ6 2873 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 SPTA1P02549 2419 aa-0.3□□□□□ -2.46
VPS50-216ENST00000484954 ARHGEF10O15013 1369 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 UNC13BO14795 1591 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 SPRR2DP22532 72 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 GCHFRP30047 84 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 DR1Q01658 176 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 KRTAP20-2Q3LI61 65 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 SPANXN1Q5VSR9 72 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 Q5VV11 94 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 PYDC1Q8WXC3 89 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 TEX15Q9BXT5 2789 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 CFAP46Q8IYW2 2715 aa-0.31□□□□□ -2.46
VPS50-216ENST00000484954 TNS1Q9HBL0 1735 aaKnown RBP-0.32□□□□□ -2.46
VPS50-216ENST00000484954 DOPEY2Q9Y3R5 2298 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 PLXNA2O75051 1894 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 C10orf142B7Z368 130 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 AKAP14Q86UN6 197 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 UBE2DNLQ8IWF7 75 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 CTAGE3PQ8IX95 158 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 SDF2Q99470 211 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 SMIM3Q9BZL3 60 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 RPRMQ9NS64 109 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 VPS13DQ5THJ4 4388 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 OVOS2A0A0J9YW53 1432 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 DISP2A7MBM2 1401 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 SPTBN1Q01082 2364 aaKnown RBP-0.32□□□□□ -2.46
VPS50-216ENST00000484954 OVOS2Q6IE36 1432 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 PKHD1L1Q86WI1 4243 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 CSMD1Q96PZ7 3565 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 ANKRD30AQ9BXX3 1397 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 DMXL1Q9Y485 3027 aa-0.32□□□□□ -2.46
VPS50-216ENST00000484954 CNOT1A5YKK6 2376 aaKnown RBP-0.33□□□□□ -2.46
VPS50-216ENST00000484954 C2CD3Q4AC94 2353 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 GOLGA3Q08378 1498 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 DNAH7Q8WXX0 4024 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 TRBV10-3A0A0K0K1G6 114 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 LOC105371267A0A1B0GV96 52 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 IFITM1P13164 125 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 KRTAP19-8Q3LI54 63 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 Q6ZUT4 128 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 PKDREJQ9NTG1 2253 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 UTP20O75691 2785 aaKnown RBP-0.33□□□□□ -2.46
VPS50-216ENST00000484954 BOD1L1Q8NFC6 3051 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 KDM5CP41229 1560 aa-0.33□□□□□ -2.46
VPS50-216ENST00000484954 TLN1Q9Y490 2541 aaKnown RBP-0.33□□□□□ -2.46
VPS50-216ENST00000484954 KIF13AQ9H1H9 1805 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 NBEAQ8NFP9 2946 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 DNAH1Q9P2D7 4330 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 REV3LO60673 3130 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 TRAV1-2A0A0B4J238 106 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 M0R2Z0 102 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 NPFFO15130 113 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 NCR2O95944 276 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 PRM1P04553 51 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 MT4P47944 62 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 RRAS2P62070 204 aaPredicted RBP-0.34□□□□□ -2.46
VPS50-216ENST00000484954 KRTAP19-6Q3LI70 58 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 CSPG4Q6UVK1 2322 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 PRG4Q92954 1404 aaPredicted RBP-0.34□□□□□ -2.46
VPS50-216ENST00000484954 CNFNQ9BYD5 112 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 LINC00312Q9Y6C7 94 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 ITPR2Q14571 2701 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 AKAP11Q9UKA4 1901 aa-0.34□□□□□ -2.46
VPS50-216ENST00000484954 EP400Q96L91 3159 aa-0.35□□□□□ -2.46
VPS50-216ENST00000484954 NIPBLQ6KC79 2804 aaeCLIP-0.35□□□□□ -2.47
VPS50-216ENST00000484954 ADGRB1O14514 1584 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 CFDP00746 253 aaPredicted RBP-0.35□□□□□ -2.47
VPS50-216ENST00000484954 SPINK8P0C7L1 97 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 CBLN1P23435 193 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 ZNF818PQ6ZRF7 136 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 SPTSSBQ8NFR3 76 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 GSKIPQ9P0R6 139 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 SCP2D1Q9UJQ7 156 aa-0.35□□□□□ -2.47
VPS50-216ENST00000484954 ZNF142P52746 1687 aaPredicted RBP-0.35□□□□□ -2.47
VPS50-216ENST00000484954 MYO9AB2RTY4 2548 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 CUBNO60494 3623 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 MUC17Q685J3 4493 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 A0A0D9SFI3 127 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 A6NIN4 97 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 J3QR89 54 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 K7ERU9 68 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 IL5P05113 134 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 CCL8P80075 99 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 S100A7L2Q5SY68 101 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 SCIMPQ6UWF3 145 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 DPH3Q96FX2 82 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 ZFHX4Q86UP3 3567 aa-0.36□□□□□ -2.47
VPS50-216ENST00000484954 PLXNA1Q9UIW2 1896 aa-0.36□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 63.2 ms