RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 C9JAW5 83 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 NPFFO15130 113 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 NDUFA3O95167 84 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 CHTF8P0CG12 524 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 CRYGAP11844 174 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 DLX6P56179 175 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 MRPS36P82909 103 aaKnown RBP3.56□□□□□ -1.84
USP40-213ENST00000483216 C2orf82Q6UX34 121 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 SMIM2Q9BVW6 85 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 TTTY12Q9BZ98 90 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 DPH3P1Q9H4G8 78 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 VPREB3Q9UKI3 123 aa3.56□□□□□ -1.84
USP40-213ENST00000483216 CNOT1A5YKK6 2376 aaKnown RBP3.56□□□□□ -1.84
USP40-213ENST00000483216 KNTC1P50748 2209 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 IGKV2D-24A0A075B6R9 120 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 SMIM9A6NGZ8 99 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 OOSP1A8MZH6 123 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 BCE1O60756 84 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 IGHV1-69P01742 117 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 CD7P09564 240 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 CECR9P0C854 216 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 WT1-ASQ06250 92 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 ALKBH6Q3KRA9 238 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 LINC00322Q6ZN03 302 aaPredicted RBP3.55□□□□□ -1.84
USP40-213ENST00000483216 RNF182Q8N6D2 247 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 LAMTOR3Q9UHA4 124 aa3.55□□□□□ -1.84
USP40-213ENST00000483216 DNAJC13O75165 2243 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 MED13Q9UHV7 2174 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 IGLV3-9A0A075B6K5 115 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 IGKV2D-26A0A0A0MRZ7 120 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 TRAV21A0A0B4J279 112 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 A0A0J9YY99 117 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 J3QQQ9 107 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 OVOL1O14753 267 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 LEPROTO15243 131 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 TIMM17BO60830 172 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 NDUFC2O95298 119 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 TCL1BO95988 128 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 IGHV3-30P01768 117 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 IGKV1-16P04430 117 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 CRYGBP07316 175 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 IGHV3-30-5P0DP03 117 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 COX7CP15954 63 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 S100A4P26447 101 aaKnown RBP3.54□□□□□ -1.84
USP40-213ENST00000483216 RHOHQ15669 191 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 ZNF56Q15929 161 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 SPRNQ5BIV9 151 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 ATP5EP2Q5VTU8 51 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 DAND5Q8N907 189 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 LINC00477Q96M19 166 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 KAAG1Q9UBP8 84 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 CSDC2Q9Y534 153 aaKnown RBP3.54□□□□□ -1.84
USP40-213ENST00000483216 ZNF407Q9C0G0 2248 aa3.54□□□□□ -1.84
USP40-213ENST00000483216 FREM1Q5H8C1 2179 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 DMXL2Q8TDJ6 3036 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 SPEGQ15772 3267 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 IGLV4-69A0A075B6H9 119 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 IGLV2-18A0A075B6J9 118 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 H3BQ85 93 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 I3L2K1 104 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 ENSAO43768 121 aaKnown RBP3.53□□□□□ -1.84
USP40-213ENST00000483216 INSL3P51460 131 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 CCL8P80075 99 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 ERCC8Q13216 396 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 TMEM155Q4W5P6 130 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 FAM222AQ5U5X8 452 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 ZNF826PQ6ZT77 177 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 EXOC3-AS1Q8N2X6 119 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 PHLDA3Q9Y5J5 127 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 NCOR2Q9Y618 2525 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 SPTBN2O15020 2390 aa3.53□□□□□ -1.84
USP40-213ENST00000483216 TRAV4A0A0B4J268 109 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 CCDC179H3BU77 68 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 IGLV2-23P01705 113 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 IGHV3-33P01772 117 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 COX6B1P14854 86 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 CRIP1P50238 77 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 ATP5EP56381 51 aaPredicted RBP3.52□□□□□ -1.85
USP40-213ENST00000483216 LOXL1Q08397 574 aaPredicted RBP3.52□□□□□ -1.85
USP40-213ENST00000483216 SFTA2Q6UW10 78 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 NPBQ8NG41 125 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 GAFA1Q96PS6 74 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 METTL26Q96S19 204 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 C21orf62Q9NYP8 219 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 ACACBO00763 2458 aa3.52□□□□□ -1.85
USP40-213ENST00000483216 TPRP12270 2363 aaKnown RBP3.52□□□□□ -1.85
USP40-213ENST00000483216 IGKV2-28A0A075B6P5 120 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 TMSB15BA0A087X1C1 80 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 TRAV17A0A0B4J275 112 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 IGHV1-3A0A0C4DH29 117 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 NDUFC1O43677 76 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 LYZL6O75951 148 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 IGKV1-17P01599 117 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 IGKV2D-28P01615 120 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 CD24P25063 80 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 HERVK_113P63121 156 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 DIAPH2-AS1Q14236 149 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 HCP5Q6MZN7 132 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 ZFP2Q6ZN57 461 aa3.51□□□□□ -1.85
USP40-213ENST00000483216 FAM216BQ8N7L0 139 aa3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms