RNA–Protein interactions for RNA: ENST00000483009.1

CCDC28B-205, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 615 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-205ENST00000483009 KRTAP17-1Q9BYP8 105 aa10.35□□□□□ -0.75
CCDC28B-205ENST00000483009 TMEM191AQ9H0A3 160 aa10.35□□□□□ -0.75
CCDC28B-205ENST00000483009 PRR34Q9NV39 138 aa10.35□□□□□ -0.75
CCDC28B-205ENST00000483009 RIGQ13278 110 aa10.34□□□□□ -0.75
CCDC28B-205ENST00000483009 Q8N1X5 172 aa10.34□□□□□ -0.75
CCDC28B-205ENST00000483009 NUP35Q8NFH5 326 aa10.34□□□□□ -0.75
CCDC28B-205ENST00000483009 DEFB104AQ8WTQ1 72 aa10.34□□□□□ -0.75
CCDC28B-205ENST00000483009 KRTAP4-5Q9BYR2 181 aa10.34□□□□□ -0.75
CCDC28B-205ENST00000483009 A0A1B0GUV1 79 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 XGP55808 180 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 CLPSL2Q6UWE3 100 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 LINC00269Q8N2A0 174 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 C20orf203Q8NBC4 194 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 NAT8BQ9UHF3 227 aa10.33□□□□□ -0.76
CCDC28B-205ENST00000483009 IGLV2-33A0A075B6J2 118 aaPredicted RBP10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 TRBV6-5A0A0K0K1A5 114 aa10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 SDHAF1A6NFY7 115 aa10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 UBE2L6O14933 153 aa10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 NCR2O95944 276 aa10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 RNF185Q96GF1 192 aa10.32□□□□□ -0.76
CCDC28B-205ENST00000483009 IGLV4-60A0A075B6I1 120 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 RAB14P61106 215 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 AMN1Q8IY45 258 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 MRAP2Q96G30 205 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 TMEM70Q9BUB7 260 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 ABCA13Q86UQ4 5058 aa10.31□□□□□ -0.76
CCDC28B-205ENST00000483009 SMIM27A0A1W2PRY6 76 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 GAS8-AS1O95177 125 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 APCSP02743 223 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 RAB4AP20338 218 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 REG3AQ06141 175 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 C14orf177Q52M58 125 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 PCLOQ9Y6V0 5065 aa10.3□□□□□ -0.76
CCDC28B-205ENST00000483009 HLA-DQA1P01909 254 aa10.29□□□□□ -0.76
CCDC28B-205ENST00000483009 ST20Q9HBF5 79 aa10.29□□□□□ -0.76
CCDC28B-205ENST00000483009 I3L3M4 83 aa10.28□□□□□ -0.76
CCDC28B-205ENST00000483009 PMCHP20382 165 aa10.28□□□□□ -0.76
CCDC28B-205ENST00000483009 RPS10P46783 165 aaKnown RBP10.28□□□□□ -0.76
CCDC28B-205ENST00000483009 KRTAP26-1Q6PEX3 210 aa10.28□□□□□ -0.76
CCDC28B-205ENST00000483009 DNAH8Q96JB1 4490 aa10.27□□□□□ -0.77
CCDC28B-205ENST00000483009 TRAV8-4A0A0B4J246 113 aa10.27□□□□□ -0.77
CCDC28B-205ENST00000483009 USP17L23D6RBM5 183 aa10.27□□□□□ -0.77
CCDC28B-205ENST00000483009 H7C423 109 aa10.27□□□□□ -0.77
CCDC28B-205ENST00000483009 IGLV10-54A0A075B6I4 117 aa10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 A0A1B0GW15 77 aa10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 IGKV2-29A2NJV5 120 aaPredicted RBP10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 POLR2KP53803 58 aaKnown RBP10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 AMMECR1LQ6DCA0 310 aa10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 TMEM242Q9NWH2 141 aa10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 FAM30AQ9NZY2 134 aa10.26□□□□□ -0.77
CCDC28B-205ENST00000483009 TRBV27A0A0K0K1C4 114 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 SMKR1H3BMG3 65 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 PPP1R17O96001 155 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 TSHBP01222 138 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 FGF6P10767 208 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 CAMPP49913 170 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 HAMPP81172 84 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 CLLU1Q5K131 121 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 FAM104BQ5XKR9 115 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 RNASEKQ6P5S7 137 aaKnown RBP10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 FAT1Q14517 4588 aa10.25□□□□□ -0.77
CCDC28B-205ENST00000483009 EPM2AB3EWF7 344 aa10.24□□□□□ -0.77
CCDC28B-205ENST00000483009 S100A8P05109 93 aa10.24□□□□□ -0.77
CCDC28B-205ENST00000483009 ESDP10768 282 aa10.24□□□□□ -0.77
CCDC28B-205ENST00000483009 MRPL54Q6P161 138 aaKnown RBP10.24□□□□□ -0.77
CCDC28B-205ENST00000483009 Q6ZSA8 131 aa10.24□□□□□ -0.77
CCDC28B-205ENST00000483009 PPP1R2P9O14990 202 aa10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 ZNF25P17030 456 aaPredicted RBP10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 HBBP68871 147 aa10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 PNRC1Q12796 327 aaPredicted RBP10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 LINC01620Q4KN68 170 aa10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 MRPL51Q4U2R6 128 aaKnown RBP10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 NRACQ8N912 160 aa10.23□□□□□ -0.77
CCDC28B-205ENST00000483009 A0A1B0GXF2 115 aa10.22□□□□□ -0.77
CCDC28B-205ENST00000483009 VCYO14598 125 aa10.22□□□□□ -0.77
CCDC28B-205ENST00000483009 PRSS1P07477 247 aa10.22□□□□□ -0.77
CCDC28B-205ENST00000483009 SUMO2P61956 95 aaKnown RBP10.22□□□□□ -0.77
CCDC28B-205ENST00000483009 IGKV3OR2-268A0A0C4DH90 116 aa10.21□□□□□ -0.77
CCDC28B-205ENST00000483009 C7orf77A4D0Y5 90 aa10.21□□□□□ -0.77
CCDC28B-205ENST00000483009 LINC00862A6NCI5 91 aa10.21□□□□□ -0.77
CCDC28B-205ENST00000483009 SMR3BP02814 79 aaPredicted RBP10.21□□□□□ -0.77
CCDC28B-205ENST00000483009 BTF3L4Q96K17 158 aa10.21□□□□□ -0.77
CCDC28B-205ENST00000483009 F8W036 122 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 FCER1GP30273 86 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 Q5VSD8 79 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 ATP5L2Q7Z4Y8 100 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 CLRN3Q8NCR9 226 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 TMEM101Q96IK0 257 aa10.2□□□□□ -0.78
CCDC28B-205ENST00000483009 MT-ND4LP03901 98 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 CKS2P33552 79 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 IFITM2Q01629 132 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 DGAT2L7PQ6IED9 249 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 MRPL52Q86TS9 123 aaKnown RBP10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 OR5A1Q8NGJ0 315 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 KIR2DL4Q99706 377 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 C20orf78Q9BR46 151 aa10.19□□□□□ -0.78
CCDC28B-205ENST00000483009 TRBV24-1A0A075B6N3 115 aa10.18□□□□□ -0.78
CCDC28B-205ENST00000483009 GAGE12HA6NDE8 117 aa10.18□□□□□ -0.78
CCDC28B-205ENST00000483009 RPL32P62910 135 aaKnown RBP10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 114.8 ms