RNA–Protein interactions for RNA: ENST00000481502.5

SYNE1-225, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 585 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-225ENST00000481502 GAGE1Q13065 139 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 GAGE4Q13068 117 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 GAGE5Q13069 117 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 IQCJQ1A5X6 159 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 GAGE13Q4V321 117 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 CHCHD7Q9BUK0 85 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 AP5S1Q9NUS5 200 aa5.74□□□□□ -1.49
SYNE1-225ENST00000481502 COL7A1Q02388 2944 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 TRBV6-8A0A0A6YYG3 113 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 A0A0J9YY99 117 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 IGLL5B9A064 214 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 GAS8-AS1O95177 125 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 P0DMU3 169 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 FAM231AP0DMU4 169 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 FAM231CP0DMU5 169 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 LORP23490 312 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-225ENST00000481502 FCER1GP30273 86 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 CCL18P55774 89 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 LAGE3Q14657 143 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 LELP1Q5T871 98 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 FA2HQ7L5A8 372 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 NIT1Q86X76 327 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 BAGE3Q86Y29 109 aa5.73□□□□□ -1.49
SYNE1-225ENST00000481502 PACRGQ96M98 296 aaPredicted RBP5.73□□□□□ -1.49
SYNE1-225ENST00000481502 TRBV25-1A0A075B6N4 114 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 IGHV1-24A0A0C4DH33 117 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 IFI27P40305 119 aaPredicted RBP5.72□□□□□ -1.49
SYNE1-225ENST00000481502 LYPD5Q6UWN5 251 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 UPK3BQ9BT76 320 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 TIMM21Q9BVV7 248 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 Q9UF83 564 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 APLNQ9ULZ1 77 aa5.72□□□□□ -1.49
SYNE1-225ENST00000481502 CSDC2Q9Y534 153 aaKnown RBP5.72□□□□□ -1.49
SYNE1-225ENST00000481502 TRAV8-6A0A0B4J262 113 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 LOC100131303A0A0U1RQF7 123 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 LOC389332A0A1B0GUA5 103 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 A0A1B0GUV1 79 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 NUDT3O95989 172 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 TSHBP01222 138 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 S100A6P06703 90 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 ZNF25P17030 456 aaPredicted RBP5.71□□□□□ -1.5
SYNE1-225ENST00000481502 C20orf203Q8NBC4 194 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 PYGO1Q9Y3Y4 419 aa5.71□□□□□ -1.5
SYNE1-225ENST00000481502 A6NJY4 79 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 HSBP1O75506 76 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 AMTP48728 403 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 PAPPA-AS1Q5QFB9 102 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 MRPL52Q86TS9 123 aaKnown RBP5.7□□□□□ -1.5
SYNE1-225ENST00000481502 TMEM243Q9BU79 118 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 CYSLTR1Q9Y271 337 aa5.7□□□□□ -1.5
SYNE1-225ENST00000481502 MRPS16Q9Y3D3 137 aaKnown RBP5.7□□□□□ -1.5
SYNE1-225ENST00000481502 HBDP02042 147 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 BTF3P20290 206 aaKnown RBP5.69□□□□□ -1.5
SYNE1-225ENST00000481502 ESRGQ1W209 222 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 NTM-AS1Q6ZSK4 140 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 TOMM6Q96B49 74 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 URB1-AS1Q96HZ7 61 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 TIMM17AQ99595 171 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 SPANXA1Q9NS26 97 aa5.69□□□□□ -1.5
SYNE1-225ENST00000481502 IGHV3-38A0A0C4DH36 116 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 UBE2L6O14933 153 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 CCL25O15444 150 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 SERF1AO75920 110 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 ATP5LO75964 103 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 MRPS36P82909 103 aaKnown RBP5.68□□□□□ -1.5
SYNE1-225ENST00000481502 CASC10Q5T4H9 136 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 LGALS9CQ6DKI2 356 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 RNASEKQ6P5S7 137 aaKnown RBP5.68□□□□□ -1.5
SYNE1-225ENST00000481502 C2orf66Q6UXQ4 117 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 ERASQ7Z444 233 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 TMEM141Q96I45 108 aa5.68□□□□□ -1.5
SYNE1-225ENST00000481502 TRAV9-2A0A087WT02 112 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 C5orf52A6NGY3 159 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 AKR1D1P51857 326 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 NDUFA6P56556 154 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 LINC01556Q5JQF7 62 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 C10orf126Q8N4M7 172 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 TMEM101Q96IK0 257 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 CHCHD5Q9BSY4 110 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 TGP01266 2768 aa5.67□□□□□ -1.5
SYNE1-225ENST00000481502 A0A087WX48 190 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 IGIPA6NJ69 53 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.66□□□□□ -1.5
SYNE1-225ENST00000481502 LEPROTL1O95214 131 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 DNAH10OSP0CZ25 163 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 FGF6P10767 208 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 LINC00310P59036 64 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 PDZD11Q5EBL8 140 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 DGAT2L7PQ6IED9 249 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 HSPB8Q9UJY1 196 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 UBE2D4Q9Y2X8 147 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 LINC00588Q9Y4M8 146 aa5.66□□□□□ -1.5
SYNE1-225ENST00000481502 A0A096LNJ9 63 aa5.65□□□□□ -1.5
SYNE1-225ENST00000481502 SIVA1O15304 175 aa5.65□□□□□ -1.5
SYNE1-225ENST00000481502 AMMECR1LQ6DCA0 310 aa5.65□□□□□ -1.5
SYNE1-225ENST00000481502 DNAH7Q8WXX0 4024 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 TMEM262E9PQX1 116 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 NUPR1O60356 82 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 S100A2P29034 98 aa5.64□□□□□ -1.51
SYNE1-225ENST00000481502 SEC11AP67812 179 aa5.64□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms