RNA–Protein interactions for RNA: ENST00000480139.5

LIME1-205, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3 BASIC

Gene LIME1, Length 819 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-205ENST00000480139 A0A087WX48 190 aa13.33□□□□□ -0.28
LIME1-205ENST00000480139 RPL32P62910 135 aaKnown RBP13.33□□□□□ -0.28
LIME1-205ENST00000480139 TMEM136Q6ZRR5 245 aa13.33□□□□□ -0.28
LIME1-205ENST00000480139 ORMDL3Q8N138 153 aa13.33□□□□□ -0.28
LIME1-205ENST00000480139 TMEM243Q9BU79 118 aa13.33□□□□□ -0.28
LIME1-205ENST00000480139 TNFRSF6BO95407 300 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 PMCHP20382 165 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 AMTP48728 403 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 COX19Q49B96 90 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 NFE4Q86UQ8 179 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 Q8N3U1 123 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 LAMTOR2Q9Y2Q5 125 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 DNAH10Q8IVF4 4471 aa13.32□□□□□ -0.28
LIME1-205ENST00000480139 VCYO14598 125 aa13.31□□□□□ -0.28
LIME1-205ENST00000480139 ELOBQ15370 118 aa13.31□□□□□ -0.28
LIME1-205ENST00000480139 GNB1LQ9BYB4 327 aa13.31□□□□□ -0.28
LIME1-205ENST00000480139 TMEM262E9PQX1 116 aa13.3□□□□□ -0.28
LIME1-205ENST00000480139 TSHBP01222 138 aa13.3□□□□□ -0.28
LIME1-205ENST00000480139 HLA-DQA1P01909 254 aa13.3□□□□□ -0.28
LIME1-205ENST00000480139 APCSP02743 223 aa13.3□□□□□ -0.28
LIME1-205ENST00000480139 MPV17L2Q567V2 206 aa13.3□□□□□ -0.28
LIME1-205ENST00000480139 H7C423 109 aa13.29□□□□□ -0.28
LIME1-205ENST00000480139 NPYP01303 97 aa13.29□□□□□ -0.28
LIME1-205ENST00000480139 Q6ZRN7 208 aaPredicted RBP13.29□□□□□ -0.28
LIME1-205ENST00000480139 PRELID3AQ96N28 172 aa13.29□□□□□ -0.28
LIME1-205ENST00000480139 FRAS1Q86XX4 4008 aa13.29□□□□□ -0.28
LIME1-205ENST00000480139 MT-ND6P03923 174 aa13.28□□□□□ -0.28
LIME1-205ENST00000480139 GAGE6Q13070 117 aa13.28□□□□□ -0.28
LIME1-205ENST00000480139 ATRAIDQ6UW56 229 aa13.28□□□□□ -0.28
LIME1-205ENST00000480139 DEFB104AQ8WTQ1 72 aa13.28□□□□□ -0.28
LIME1-205ENST00000480139 KIR2DL4Q99706 377 aa13.28□□□□□ -0.28
LIME1-205ENST00000480139 A0A1B0GUV1 79 aa13.27□□□□□ -0.29
LIME1-205ENST00000480139 PRSS47A8MTI9 375 aa13.27□□□□□ -0.29
LIME1-205ENST00000480139 UBE2L6O14933 153 aa13.27□□□□□ -0.29
LIME1-205ENST00000480139 TCAPO15273 167 aa13.27□□□□□ -0.29
LIME1-205ENST00000480139 SMIM2Q9BVW6 85 aa13.27□□□□□ -0.29
LIME1-205ENST00000480139 TRAV8-3A0A0A6YYJ7 113 aa13.26□□□□□ -0.29
LIME1-205ENST00000480139 ESDP10768 282 aa13.26□□□□□ -0.29
LIME1-205ENST00000480139 RBX1P62877 108 aa13.26□□□□□ -0.29
LIME1-205ENST00000480139 KLK12Q9UKR0 248 aa13.26□□□□□ -0.29
LIME1-205ENST00000480139 DNAH17Q9UFH2 4485 aa13.26□□□□□ -0.29
LIME1-205ENST00000480139 PRSS29PA6NIE9 313 aa13.25□□□□□ -0.29
LIME1-205ENST00000480139 FCER1GP30273 86 aa13.25□□□□□ -0.29
LIME1-205ENST00000480139 Q8N976 141 aa13.25□□□□□ -0.29
LIME1-205ENST00000480139 TGIF2-C20orf24A0A0A6YYL0 155 aa13.24□□□□□ -0.29
LIME1-205ENST00000480139 YPEL4Q96NS1 127 aa13.24□□□□□ -0.29
LIME1-205ENST00000480139 FAT2Q9NYQ8 4349 aa13.23□□□□□ -0.29
LIME1-205ENST00000480139 ANGP03950 147 aaKnown RBP13.23□□□□□ -0.29
LIME1-205ENST00000480139 Q0VG73 95 aa13.23□□□□□ -0.29
LIME1-205ENST00000480139 MAP1LC3AQ9H492 121 aa13.23□□□□□ -0.29
LIME1-205ENST00000480139 SMCO4Q9NRQ5 59 aa13.23□□□□□ -0.29
LIME1-205ENST00000480139 ZNF25P17030 456 aaPredicted RBP13.22□□□□□ -0.29
LIME1-205ENST00000480139 Q9HAA7 133 aa13.22□□□□□ -0.29
LIME1-205ENST00000480139 PRR34Q9NV39 138 aa13.22□□□□□ -0.29
LIME1-205ENST00000480139 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.21□□□□□ -0.29
LIME1-205ENST00000480139 IGKV2-29A2NJV5 120 aaPredicted RBP13.21□□□□□ -0.29
LIME1-205ENST00000480139 TNP2Q05952 138 aa13.21□□□□□ -0.29
LIME1-205ENST00000480139 C20orf203Q8NBC4 194 aa13.21□□□□□ -0.29
LIME1-205ENST00000480139 UBE2WQ96B02 151 aa13.21□□□□□ -0.29
LIME1-205ENST00000480139 RMI2Q96E14 147 aa13.21□□□□□ -0.29
LIME1-205ENST00000480139 TM2D2Q9BX73 214 aa13.21□□□□□ -0.29
LIME1-205ENST00000480139 CRPP02741 224 aa13.2□□□□□ -0.3
LIME1-205ENST00000480139 FGF6P10767 208 aa13.2□□□□□ -0.3
LIME1-205ENST00000480139 AMMECR1LQ6DCA0 310 aa13.2□□□□□ -0.3
LIME1-205ENST00000480139 ENHOQ6UWT2 76 aa13.2□□□□□ -0.3
LIME1-205ENST00000480139 MRPL52Q86TS9 123 aaKnown RBP13.2□□□□□ -0.3
LIME1-205ENST00000480139 MRPL18Q9H0U6 180 aaKnown RBP13.2□□□□□ -0.3
LIME1-205ENST00000480139 COX11Q9Y6N1 276 aa13.2□□□□□ -0.3
LIME1-205ENST00000480139 IGLV4-60A0A075B6I1 120 aa13.19□□□□□ -0.3
LIME1-205ENST00000480139 MIAQ16674 131 aa13.19□□□□□ -0.3
LIME1-205ENST00000480139 KIAA1644Q3SXP7 199 aa13.19□□□□□ -0.3
LIME1-205ENST00000480139 CBLN2Q8IUK8 224 aa13.19□□□□□ -0.3
LIME1-205ENST00000480139 LINC00269Q8N2A0 174 aa13.19□□□□□ -0.3
LIME1-205ENST00000480139 A0A1B0GVY2 172 aa13.18□□□□□ -0.3
LIME1-205ENST00000480139 K7EMI3 77 aa13.18□□□□□ -0.3
LIME1-205ENST00000480139 SMAGPQ0VAQ4 97 aa13.18□□□□□ -0.3
LIME1-205ENST00000480139 Q8N8P6 123 aa13.18□□□□□ -0.3
LIME1-205ENST00000480139 TMEM18Q96B42 140 aa13.18□□□□□ -0.3
LIME1-205ENST00000480139 ALKBH7Q9BT30 221 aaPredicted RBP13.18□□□□□ -0.3
LIME1-205ENST00000480139 REG3AQ06141 175 aa13.17□□□□□ -0.3
LIME1-205ENST00000480139 FABP9Q0Z7S8 132 aa13.17□□□□□ -0.3
LIME1-205ENST00000480139 RNASEKQ6P5S7 137 aaKnown RBP13.17□□□□□ -0.3
LIME1-205ENST00000480139 NXT2Q9NPJ8 142 aaKnown RBP13.17□□□□□ -0.3
LIME1-205ENST00000480139 TRAPPC1Q9Y5R8 145 aa13.17□□□□□ -0.3
LIME1-205ENST00000480139 LOC389332A0A1B0GUA5 103 aa13.16□□□□□ -0.3
LIME1-205ENST00000480139 PSCAO43653 123 aa13.16□□□□□ -0.3
LIME1-205ENST00000480139 RAB5AP20339 215 aa13.16□□□□□ -0.3
LIME1-205ENST00000480139 TMEM101Q96IK0 257 aa13.16□□□□□ -0.3
LIME1-205ENST00000480139 CSDC2Q9Y534 153 aaKnown RBP13.16□□□□□ -0.3
LIME1-205ENST00000480139 TIMM21Q9BVV7 248 aa13.15□□□□□ -0.3
LIME1-205ENST00000480139 IGKV2D-24A0A075B6R9 120 aa13.14□□□□□ -0.31
LIME1-205ENST00000480139 OR5A1Q8NGJ0 315 aa13.14□□□□□ -0.31
LIME1-205ENST00000480139 C1orf43Q9BWL3 253 aa13.14□□□□□ -0.31
LIME1-205ENST00000480139 UBE2D4Q9Y2X8 147 aa13.14□□□□□ -0.31
LIME1-205ENST00000480139 HECTD4Q9Y4D8 3996 aa13.13□□□□□ -0.31
LIME1-205ENST00000480139 EPPK1P58107 5090 aaKnown RBP13.13□□□□□ -0.31
LIME1-205ENST00000480139 TRAV8-4A0A0B4J246 113 aa13.13□□□□□ -0.31
LIME1-205ENST00000480139 CLPSL2Q6UWE3 100 aa13.13□□□□□ -0.31
LIME1-205ENST00000480139 PKD1P98161 4303 aa13.13□□□□□ -0.31
LIME1-205ENST00000480139 A0A087WTM6 91 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms