RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 IBA57Q5T440 356 aaKnown RBP4.51□□□□□ -1.69
SF3B1-209ENST00000479532 GDF5OSQ5U4N7 250 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 LINC00322Q6ZN03 302 aaPredicted RBP4.51□□□□□ -1.69
SF3B1-209ENST00000479532 SBSPONQ8IVN8 264 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 FAM19A2Q8N3H0 131 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 NUP35Q8NFH5 326 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 ODF3Q96PU9 254 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 ASCL2Q99929 193 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 MDFICQ9P1T7 246 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 EPDR1Q9UM22 224 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 TP53TG1Q9Y2A0 90 aa4.51□□□□□ -1.69
SF3B1-209ENST00000479532 DNAH3Q8TD57 4116 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 TRBV20-1A0A075B6N2 111 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 IGKV2-40A0A087WW87 121 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-209ENST00000479532 hDV102S1A0JD36 115 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 A8MTW9 85 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 GGTLC3B5MD39 225 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 F8WDY8 70 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 INSP01308 110 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 IGKV2D-40P01614 121 aaPredicted RBP4.5□□□□□ -1.69
SF3B1-209ENST00000479532 TCRAP04437 139 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 ZNF138P52744 262 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 NDUFV3P56181 108 aaKnown RBP4.5□□□□□ -1.69
SF3B1-209ENST00000479532 FXYD7P58549 80 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 DEFB1P60022 68 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 DEFB135Q30KP9 77 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 CENPWQ5EE01 88 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 RNASEKQ6P5S7 137 aaKnown RBP4.5□□□□□ -1.69
SF3B1-209ENST00000479532 C9orf47Q6ZRZ4 202 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 GOLT1AQ6ZVE7 132 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 TEN1Q86WV5 123 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 TMEM75Q8N9X5 138 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 IGF2BP2-AS1Q96M15 143 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 XCL2Q9UBD3 114 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 LENEPQ9Y5L5 61 aa4.5□□□□□ -1.69
SF3B1-209ENST00000479532 PRAC2D3DTV9 90 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 PEX7O00628 323 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 VCYO14598 125 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 IFITM1P13164 125 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 GNG5P63218 68 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 ERCC8Q13216 396 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 SPINK13Q1W4C9 94 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 CFAP126Q5VTH2 177 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 ZNRF2Q8NHG8 242 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 MPLKIPQ8TAP9 179 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 FMC1Q96HJ9 113 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 URB1-AS1Q96HZ7 61 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 TM2D3Q9BRN9 247 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 IMUPQ9GZP8 106 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 ZNF492Q9P255 531 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 CSDC2Q9Y534 153 aaKnown RBP4.49□□□□□ -1.69
SF3B1-209ENST00000479532 AGRNO00468 2067 aa4.49□□□□□ -1.69
SF3B1-209ENST00000479532 IGHV3OR16-12A0A075B7B8 117 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 SMIM9A6NGZ8 99 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 IGLL5B9A064 214 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 IGLV2-8P01709 118 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 PRB4P10163 310 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-209ENST00000479532 FOXA3P55318 350 aaPredicted RBP4.48□□□□□ -1.69
SF3B1-209ENST00000479532 XGP55808 180 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 GAGE2BQ13066 116 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 RRN3P1Q2M238 152 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 ETDBQ3ZM63 59 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 GAGE2EQ4V326 116 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 AMTNQ6UX39 209 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 PRNTQ86SH4 94 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 OR13C6PQ8NH95 151 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 AGPAT4-IT1Q9H0P7 198 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 GAGE2DQ9UEU5 116 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 NOTCH1P46531 2555 aa4.48□□□□□ -1.69
SF3B1-209ENST00000479532 TRAV12-2A0A075B6T6 113 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 FAM240AA0A1B0GVK7 77 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 A4D1N5 150 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 LINC01546A6NGU7 62 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 A8MWL6 223 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 J3KT08 172 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 SNAI2O43623 268 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 MIFP14174 115 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 WFDC2Q14508 124 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 KIAA1644Q3SXP7 199 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 CEND1Q8N111 149 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 Q8TAT8 98 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 LINC00479Q96M42 142 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 LINC01587Q99440 93 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 OVOL2Q9BRP0 275 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 RETNQ9HD89 108 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 U3KQK5 164 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 NBEAL1Q6ZS30 2694 aa4.47□□□□□ -1.69
SF3B1-209ENST00000479532 TRAV8-1A0A0A6YYK1 113 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 TRAV12-3A0A0B4J271 114 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 TRAV21A0A0B4J279 112 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 IGLV5-39A0A0G2JS06 123 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 TRBV6-1A0A0K0K1D8 114 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 KLLNB2CW77 178 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 SNCGO76070 127 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 MT-ATP8P03928 68 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 RNASE4P34096 147 aaKnown RBP4.46□□□□□ -1.7
SF3B1-209ENST00000479532 PMVKQ15126 192 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 TTC32Q5I0X7 151 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 Q86TA4 180 aa4.46□□□□□ -1.7
SF3B1-209ENST00000479532 CSNK1G2-AS1Q8NCQ2 148 aa4.46□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms