RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 SMR3BP02814 79 aaPredicted RBP15.28■□□□□ 0.04
C9orf3-215ENST00000478473 CEBPGP53567 150 aa15.28■□□□□ 0.04
C9orf3-215ENST00000478473 COTL1Q14019 142 aa15.28■□□□□ 0.04
C9orf3-215ENST00000478473 TSKUQ8WUA8 353 aa15.28■□□□□ 0.04
C9orf3-215ENST00000478473 VPS13BQ7Z7G8 4022 aa15.27■□□□□ 0.04
C9orf3-215ENST00000478473 SRRM2Q9UQ35 2752 aaKnown RBP15.26■□□□□ 0.03
C9orf3-215ENST00000478473 TRAV8-4A0A0B4J246 113 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 TRAV26-2A0A0B4J265 109 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 NCR2O95944 276 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 HAMPP81172 84 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 REG3AQ06141 175 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 FAM74A3Q4VXF1 159 aa15.26■□□□□ 0.03
C9orf3-215ENST00000478473 IGLV4-60A0A075B6I1 120 aa15.25■□□□□ 0.03
C9orf3-215ENST00000478473 TRBV6-5A0A0K0K1A5 114 aa15.25■□□□□ 0.03
C9orf3-215ENST00000478473 FAM229AH3BQW9 127 aa15.25■□□□□ 0.03
C9orf3-215ENST00000478473 A0A1B0GUT8 65 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 HIGD1CA8MV81 97 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 USP17L23D6RBM5 183 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 INAFM2P0DMQ5 153 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 AMTP48728 403 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 RPL39LQ96EH5 51 aaKnown RBP15.24■□□□□ 0.03
C9orf3-215ENST00000478473 TMEM191AQ9H0A3 160 aa15.24■□□□□ 0.03
C9orf3-215ENST00000478473 DGAT2L7PQ6IED9 249 aa15.23■□□□□ 0.03
C9orf3-215ENST00000478473 SMDT1Q9H4I9 107 aa15.23■□□□□ 0.03
C9orf3-215ENST00000478473 V9GYV3 84 aa15.23■□□□□ 0.03
C9orf3-215ENST00000478473 HLA-DQA1P01909 254 aa15.22■□□□□ 0.03
C9orf3-215ENST00000478473 LINC01620Q4KN68 170 aa15.22■□□□□ 0.03
C9orf3-215ENST00000478473 CLPSL2Q6UWE3 100 aa15.22■□□□□ 0.03
C9orf3-215ENST00000478473 ISOC2Q96AB3 205 aa15.22■□□□□ 0.03
C9orf3-215ENST00000478473 H7C423 109 aa15.21■□□□□ 0.03
C9orf3-215ENST00000478473 PRSS1P07477 247 aa15.21■□□□□ 0.03
C9orf3-215ENST00000478473 TMEM241Q24JQ0 296 aa15.21■□□□□ 0.03
C9orf3-215ENST00000478473 BORCS7Q96B45 105 aa15.21■□□□□ 0.03
C9orf3-215ENST00000478473 SDHAF1A6NFY7 115 aa15.2■□□□□ 0.02
C9orf3-215ENST00000478473 C9JQL5 133 aa15.2■□□□□ 0.02
C9orf3-215ENST00000478473 UBE2L6O14933 153 aa15.2■□□□□ 0.02
C9orf3-215ENST00000478473 CLRN3Q8NCR9 226 aa15.2■□□□□ 0.02
C9orf3-215ENST00000478473 CHAC1Q9BUX1 264 aa15.2■□□□□ 0.02
C9orf3-215ENST00000478473 RPL23P62829 140 aaKnown RBP15.19■□□□□ 0.02
C9orf3-215ENST00000478473 RNF185Q96GF1 192 aa15.19■□□□□ 0.02
C9orf3-215ENST00000478473 SCXQ7RTU7 201 aa15.18■□□□□ 0.02
C9orf3-215ENST00000478473 DEFB104AQ8WTQ1 72 aa15.18■□□□□ 0.02
C9orf3-215ENST00000478473 RAB4AP20338 218 aa15.17■□□□□ 0.02
C9orf3-215ENST00000478473 C9orf163Q8N9P6 203 aa15.17■□□□□ 0.02
C9orf3-215ENST00000478473 NUP35Q8NFH5 326 aa15.17■□□□□ 0.02
C9orf3-215ENST00000478473 I3L3M4 83 aa15.16■□□□□ 0.02
C9orf3-215ENST00000478473 POLR2KP53803 58 aaKnown RBP15.16■□□□□ 0.02
C9orf3-215ENST00000478473 PEA15Q15121 130 aa15.16■□□□□ 0.02
C9orf3-215ENST00000478473 MRAP2Q96G30 205 aa15.16■□□□□ 0.02
C9orf3-215ENST00000478473 NAT8Q9UHE5 227 aa15.16■□□□□ 0.02
C9orf3-215ENST00000478473 IGLV10-54A0A075B6I4 117 aa15.15■□□□□ 0.02
C9orf3-215ENST00000478473 GAS8-AS1O95177 125 aa15.15■□□□□ 0.02
C9orf3-215ENST00000478473 APCSP02743 223 aa15.15■□□□□ 0.02
C9orf3-215ENST00000478473 ESDP10768 282 aa15.15■□□□□ 0.02
C9orf3-215ENST00000478473 SRSF3P84103 164 aaKnown RBP15.15■□□□□ 0.02
C9orf3-215ENST00000478473 TRBV27A0A0K0K1C4 114 aa15.14■□□□□ 0.01
C9orf3-215ENST00000478473 CNBPP62633 177 aaKnown RBP15.14■□□□□ 0.01
C9orf3-215ENST00000478473 RIGQ13278 110 aa15.14■□□□□ 0.01
C9orf3-215ENST00000478473 CIRBP-AS1Q8TBR5 109 aa15.14■□□□□ 0.01
C9orf3-215ENST00000478473 NAT8BQ9UHF3 227 aa15.14■□□□□ 0.01
C9orf3-215ENST00000478473 MYCBP2O75592 4640 aa15.14■□□□□ 0.01
C9orf3-215ENST00000478473 ZNF25P17030 456 aaPredicted RBP15.13■□□□□ 0.01
C9orf3-215ENST00000478473 ST20Q9HBF5 79 aa15.13■□□□□ 0.01
C9orf3-215ENST00000478473 SMIM27A0A1W2PRY6 76 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 TSHBP01222 138 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 FGF6P10767 208 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 PMCHP20382 165 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 AMN1Q8IY45 258 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 LINC00528Q8N1L1 170 aa15.12■□□□□ 0.01
C9orf3-215ENST00000478473 FLG2Q5D862 2391 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-215ENST00000478473 PLA2G1BP04054 148 aaKnown RBP15.11■□□□□ 0.01
C9orf3-215ENST00000478473 RPS10P46783 165 aaKnown RBP15.11■□□□□ 0.01
C9orf3-215ENST00000478473 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-215ENST00000478473 IGKV2-29A2NJV5 120 aaPredicted RBP15.1■□□□□ 0.01
C9orf3-215ENST00000478473 ADIRFQ15847 76 aa15.1■□□□□ 0.01
C9orf3-215ENST00000478473 AMMECR1LQ6DCA0 310 aa15.1■□□□□ 0.01
C9orf3-215ENST00000478473 PPP1R17O96001 155 aa15.09■□□□□ 0.01
C9orf3-215ENST00000478473 SDIM1Q6ZPB5 146 aa15.09■□□□□ 0.01
C9orf3-215ENST00000478473 DMBT1Q9UGM3 2413 aaPredicted RBP15.09■□□□□ 0.01
C9orf3-215ENST00000478473 MRPL52Q86TS9 123 aaKnown RBP15.08■□□□□ 0
C9orf3-215ENST00000478473 NRACQ8N912 160 aa15.08■□□□□ 0
C9orf3-215ENST00000478473 KRTAP10-4P60372 401 aaPredicted RBP15.07■□□□□ 0
C9orf3-215ENST00000478473 A0A1B0GW15 77 aa15.06■□□□□ 0
C9orf3-215ENST00000478473 SLPIP03973 132 aa15.06■□□□□ 0
C9orf3-215ENST00000478473 FAM104BQ5XKR9 115 aa15.06■□□□□ 0
C9orf3-215ENST00000478473 RNASEKQ6P5S7 137 aaKnown RBP15.06■□□□□ 0
C9orf3-215ENST00000478473 OR5A1Q8NGJ0 315 aa15.06■□□□□ 0
C9orf3-215ENST00000478473 TMEM242Q9NWH2 141 aa15.06■□□□□ 0
C9orf3-215ENST00000478473 hDV102S1A0JD36 115 aa15.05■□□□□ -0
C9orf3-215ENST00000478473 GAGE12HA6NDE8 117 aa15.05■□□□□ -0
C9orf3-215ENST00000478473 VCYO14598 125 aa15.05■□□□□ -0
C9orf3-215ENST00000478473 CIRBPQ14011 172 aaKnown RBP15.05■□□□□ -0
C9orf3-215ENST00000478473 C15orf56Q8N910 161 aa15.05■□□□□ -0
C9orf3-215ENST00000478473 CHCHD10Q8WYQ3 142 aaPredicted RBP15.05■□□□□ -0
C9orf3-215ENST00000478473 HERC1Q15751 4861 aa15.05■□□□□ -0
C9orf3-215ENST00000478473 LINC00862A6NCI5 91 aa15.04■□□□□ -0
C9orf3-215ENST00000478473 CFAP161Q6P656 301 aa15.04■□□□□ -0
C9orf3-215ENST00000478473 TRBV24-1A0A075B6N3 115 aa15.03■□□□□ -0
C9orf3-215ENST00000478473 SUMO2P61956 95 aaKnown RBP15.03■□□□□ -0
C9orf3-215ENST00000478473 BTF3L4Q96K17 158 aa15.03■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms