RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 TRGC1P0CF51 173 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 RPL36AP83881 106 aaKnown RBP9.29□□□□□ -0.92
UPF3A-204ENST00000475218 TMEM241Q24JQ0 296 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 CENPWQ5EE01 88 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 RPL36ALQ969Q0 106 aaKnown RBP9.29□□□□□ -0.92
UPF3A-204ENST00000475218 TMEM70Q9BUB7 260 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 TM2D2Q9BX73 214 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 C19orf71A6NCJ1 209 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 PHOX2AO14813 284 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 GZMBP10144 247 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 KLK12Q9UKR0 248 aa9.29□□□□□ -0.92
UPF3A-204ENST00000475218 IGLC6P0CF74 106 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 MEF2BQ02080 365 aaPredicted RBP9.28□□□□□ -0.92
UPF3A-204ENST00000475218 ZNF56Q15929 161 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 NTM-AS1Q6ZSK4 140 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 BAALCQ8WXS3 180 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 FRZBQ92765 325 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 URGCP-MRPS24S4R325 110 aa9.28□□□□□ -0.92
UPF3A-204ENST00000475218 TRBV6-8A0A0A6YYG3 113 aa9.27□□□□□ -0.92
UPF3A-204ENST00000475218 PRSS47A8MTI9 375 aa9.27□□□□□ -0.92
UPF3A-204ENST00000475218 JOSD1Q15040 202 aaPredicted RBP9.27□□□□□ -0.92
UPF3A-204ENST00000475218 Q6ZSA8 131 aa9.27□□□□□ -0.92
UPF3A-204ENST00000475218 PACRGQ96M98 296 aaPredicted RBP9.27□□□□□ -0.92
UPF3A-204ENST00000475218 SMIM7Q9BQ49 75 aa9.27□□□□□ -0.92
UPF3A-204ENST00000475218 SPANXN1Q5VSR9 72 aa9.27□□□□□ -0.93
UPF3A-204ENST00000475218 IMMP2LQ96T52 175 aa9.27□□□□□ -0.93
UPF3A-204ENST00000475218 DDTP30046 118 aa9.26□□□□□ -0.93
UPF3A-204ENST00000475218 ENHOQ6UWT2 76 aa9.26□□□□□ -0.93
UPF3A-204ENST00000475218 HIST1H2BLQ99880 126 aa9.26□□□□□ -0.93
UPF3A-204ENST00000475218 CHCHD7Q9BUK0 85 aa9.26□□□□□ -0.93
UPF3A-204ENST00000475218 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.25□□□□□ -0.93
UPF3A-204ENST00000475218 FABP4P15090 132 aa9.25□□□□□ -0.93
UPF3A-204ENST00000475218 LINC01620Q4KN68 170 aa9.25□□□□□ -0.93
UPF3A-204ENST00000475218 MPV17L2Q567V2 206 aa9.25□□□□□ -0.93
UPF3A-204ENST00000475218 KCNIP4Q6PIL6 250 aa9.25□□□□□ -0.93
UPF3A-204ENST00000475218 UBE2WQ96B02 151 aa9.25□□□□□ -0.93
UPF3A-204ENST00000475218 A0A087WX48 190 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 INAFM2P0DMQ5 153 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 OR2D3Q8NGH3 330 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 C14orf144Q96I85 54 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 IGKV2D-24A0A075B6R9 120 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 PDE6DO43924 150 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 C2orf88Q9BSF0 95 aa9.24□□□□□ -0.93
UPF3A-204ENST00000475218 FLG2Q5D862 2391 aaPredicted RBP9.24□□□□□ -0.93
UPF3A-204ENST00000475218 F5H697 171 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 M0QY20 66 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 GNG4P50150 75 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 RPL23P62829 140 aaKnown RBP9.23□□□□□ -0.93
UPF3A-204ENST00000475218 ADIRFQ15847 76 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 FER1L6-AS1Q8NA97 138 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 TMEM18Q96B42 140 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 SMIM12Q96EX1 92 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 AP1S3Q96PC3 154 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 COX11Q9Y6N1 276 aa9.23□□□□□ -0.93
UPF3A-204ENST00000475218 Q8N976 141 aa9.22□□□□□ -0.93
UPF3A-204ENST00000475218 TPPP3Q9BW30 176 aa9.22□□□□□ -0.93
UPF3A-204ENST00000475218 TRAV9-1A0A075B6T8 112 aa9.22□□□□□ -0.93
UPF3A-204ENST00000475218 SUMO4Q6EEV6 95 aa9.22□□□□□ -0.93
UPF3A-204ENST00000475218 MRPL52Q86TS9 123 aaKnown RBP9.22□□□□□ -0.93
UPF3A-204ENST00000475218 XKRY2A2RUG3 117 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 TMEM262E9PQX1 116 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 K7EN84 100 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 RPS20P60866 119 aaKnown RBP9.21□□□□□ -0.94
UPF3A-204ENST00000475218 IQCJQ1A5X6 159 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 KRTAP26-1Q6PEX3 210 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 RMI2Q96E14 147 aa9.21□□□□□ -0.94
UPF3A-204ENST00000475218 LYZL1Q6UWQ5 148 aa9.2□□□□□ -0.94
UPF3A-204ENST00000475218 NUDT10Q8NFP7 164 aa9.2□□□□□ -0.94
UPF3A-204ENST00000475218 DAZAP1Q96EP5 407 aaKnown RBP9.2□□□□□ -0.94
UPF3A-204ENST00000475218 NUDT11Q96G61 164 aa9.2□□□□□ -0.94
UPF3A-204ENST00000475218 CHCHD5Q9BSY4 110 aa9.2□□□□□ -0.94
UPF3A-204ENST00000475218 DMBT1Q9UGM3 2413 aaPredicted RBP9.2□□□□□ -0.94
UPF3A-204ENST00000475218 P01737 135 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 CTRLP40313 264 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 PRR34Q9NV39 138 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 ANGP03950 147 aaKnown RBP9.19□□□□□ -0.94
UPF3A-204ENST00000475218 MGPP08493 103 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 SMIM17P0DL12 118 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 RBX1P62877 108 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 CACNG7P62955 275 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 Q0VG73 95 aa9.19□□□□□ -0.94
UPF3A-204ENST00000475218 FAM229AH3BQW9 127 aa9.18□□□□□ -0.94
UPF3A-204ENST00000475218 NTF3P20783 257 aa9.18□□□□□ -0.94
UPF3A-204ENST00000475218 GAGE6Q13070 117 aa9.18□□□□□ -0.94
UPF3A-204ENST00000475218 PDZD11Q5EBL8 140 aa9.18□□□□□ -0.94
UPF3A-204ENST00000475218 OCC1Q8TAD7 63 aa9.18□□□□□ -0.94
UPF3A-204ENST00000475218 RNASE7Q9H1E1 156 aaKnown RBP9.18□□□□□ -0.94
UPF3A-204ENST00000475218 F2Z2F3 143 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 SCXQ7RTU7 201 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 C1orf43Q9BWL3 253 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 CNFNQ9BYD5 112 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 CLPSL2Q6UWE3 100 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 DEFB104AQ8WTQ1 72 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 GTSF1Q8WW33 167 aa9.17□□□□□ -0.94
UPF3A-204ENST00000475218 TRBV25-1A0A075B6N4 114 aa9.16□□□□□ -0.94
UPF3A-204ENST00000475218 TMEM97Q5BJF2 176 aa9.16□□□□□ -0.94
UPF3A-204ENST00000475218 LINC00269Q8N2A0 174 aa9.16□□□□□ -0.94
UPF3A-204ENST00000475218 C20orf203Q8NBC4 194 aa9.16□□□□□ -0.94
UPF3A-204ENST00000475218 IGHV1-24A0A0C4DH33 117 aa9.15□□□□□ -0.94
UPF3A-204ENST00000475218 USP17L23D6RBM5 183 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms