RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 GVQW2A0A096LPI5 108 aaPredicted RBP4.74□□□□□ -1.65
USP54-211ENST00000474929 A0A1B0GV50 99 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 LOC105371267A0A1B0GV96 52 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 AMTP48728 403 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 FHITP49789 147 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 KRTAP10-6P60371 365 aaPredicted RBP4.74□□□□□ -1.65
USP54-211ENST00000474929 UBE2G2P60604 165 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 C10orf91Q5T1B1 145 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 C15orf56Q8N910 161 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 NDFIP1Q9BT67 221 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 ZNF471Q9BX82 626 aaPredicted RBP4.74□□□□□ -1.65
USP54-211ENST00000474929 TMEM167BQ9NRX6 74 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 PHLDA3Q9Y5J5 127 aa4.74□□□□□ -1.65
USP54-211ENST00000474929 TRBV25-1A0A075B6N4 114 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 TRAV34A0A0B4J273 112 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 CTXND1A0A1B0GTU2 59 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 F6UZH7 168 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 H2AFB1P0C5Y9 115 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 RAB5CP51148 216 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 BLOC1S1P78537 153 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 MT1HP80294 61 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 UFSP1Q6NVU6 142 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 SVBPQ8N300 66 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 TVP23CQ96ET8 276 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 KRTAP4-2Q9BYR5 136 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 TREM1Q9NP99 234 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 EPDR1Q9UM22 224 aa4.73□□□□□ -1.65
USP54-211ENST00000474929 MAP1LC3B2A6NCE7 125 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 TCRAP04437 139 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 S100A4P26447 101 aaKnown RBP4.72□□□□□ -1.65
USP54-211ENST00000474929 PTTG1IPP53801 180 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 CST9LP1Q5W188 147 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 ALKAL2Q6UX46 152 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 LINC00173Q6ZV60 143 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 PRNTQ86SH4 94 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 LINC00337Q8N6G1 96 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 C5orf17Q8NAS9 161 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 OR10G8Q8NGN5 311 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 FAM213BQ8TBF2 198 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 SFT2D1Q8WV19 159 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 CARD19Q96LW7 228 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 SEC11CQ9BY50 192 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 MAP1LC3BQ9GZQ8 125 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 PSG8Q9UQ74 426 aa4.72□□□□□ -1.65
USP54-211ENST00000474929 MACF1Q9UPN3 7388 aaKnown RBP4.72□□□□□ -1.65
USP54-211ENST00000474929 A0A1W2PRE2 83 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 K7EQM0 130 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 SNAPINO95295 136 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 FLI1Q01543 452 aaPredicted RBP4.71□□□□□ -1.66
USP54-211ENST00000474929 HIGD2BQ4VC39 106 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 SMUG1Q53HV7 270 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 FAM74A4Q5TZK3 123 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 KRTAP4-9Q9BYQ8 210 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 GFRA4Q9GZZ7 299 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 RPP21Q9H633 154 aaKnown RBP4.71□□□□□ -1.66
USP54-211ENST00000474929 Q9UF83 564 aa4.71□□□□□ -1.66
USP54-211ENST00000474929 LOC107984640A0A0U1RRK4 108 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 TMEM218A2RU14 115 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 FAM74A7A6NL05 159 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 PAGE4O60829 102 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 FGF6P10767 208 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 RNASE3P12724 160 aaKnown RBP4.7□□□□□ -1.66
USP54-211ENST00000474929 SULT1A2P50226 295 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 ZNF80P51504 273 aaPredicted RBP4.7□□□□□ -1.66
USP54-211ENST00000474929 PRR27Q6MZM9 219 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 TYMSOSQ8TAI1 123 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 MBD3L1Q8WWY6 194 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 RETNLBQ9BQ08 111 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 PPDPFQ9H3Y8 114 aa4.7□□□□□ -1.66
USP54-211ENST00000474929 SERTM2A0A1B0GWG4 89 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 UMAD1C9J7I0 102 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 PEX7O00628 323 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 GCGP01275 180 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 CCL20P78556 96 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 GAGE6Q13070 117 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 SAPCD1Q5SSQ6 148 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 ISOC2Q96AB3 205 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 NKX6-2Q9C056 277 aaPredicted RBP4.69□□□□□ -1.66
USP54-211ENST00000474929 C11orf21Q9P2W6 132 aa4.69□□□□□ -1.66
USP54-211ENST00000474929 A0A087WZ39 114 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 IGHV1-24A0A0C4DH33 117 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 A0A1B0GUV1 79 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 M0R2T5 61 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 IQCJQ1A5X6 159 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 C9orf116Q5BN46 136 aaPredicted RBP4.68□□□□□ -1.66
USP54-211ENST00000474929 FP248Q71RG6 208 aaPredicted RBP4.68□□□□□ -1.66
USP54-211ENST00000474929 HIST1H2BAQ96A08 127 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 IL36BQ9NZH7 164 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 ARL2-SNX15V9GYD0 113 aa4.68□□□□□ -1.66
USP54-211ENST00000474929 GAGE12HA6NDE8 117 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 FABP5P3A8MUU1 101 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 APOC3P02656 99 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 CRIP1P50238 77 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 UBE2G1P62253 170 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 GAGE2BQ13066 116 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 PEA15Q15121 130 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 GNG13Q9P2W3 67 aa4.67□□□□□ -1.66
USP54-211ENST00000474929 TMSB15BA0A087X1C1 80 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 IGKV3D-20A0A0C4DH25 116 aa4.66□□□□□ -1.66
USP54-211ENST00000474929 A0A1W2PNN7 141 aa4.66□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms