RNA–Protein interactions for RNA: ENST00000474413.5

EFNA1-204, Transcript of ephrin A1, human

TSL 3

Gene EFNA1, Length 1,083 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
EFNA1-204	ENST00000474413	IGLV5-52	A0A0A0MRZ9	124 aa		11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	RPS10	P46783	165 aa	Known RBP	11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	IFITM2	Q01629	132 aa		11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	SREK1IP1	Q8N9Q2	155 aa	Predicted RBP	11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	TMEM243	Q9BU79	118 aa		11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	TMEM191A	Q9H0A3	160 aa		11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	VPS13B	Q7Z7G8	4022 aa		11.81	□□□□□ -0.52
EFNA1-204	ENST00000474413	TRBV6-5	A0A0K0K1A5	114 aa		11.8	□□□□□ -0.52
EFNA1-204	ENST00000474413	SMIM27	A0A1W2PRY6	76 aa		11.8	□□□□□ -0.52
EFNA1-204	ENST00000474413	GCSH	P23434	173 aa		11.8	□□□□□ -0.52
EFNA1-204	ENST00000474413	AMN1	Q8IY45	258 aa		11.8	□□□□□ -0.52
EFNA1-204	ENST00000474413	LINC00269	Q8N2A0	174 aa		11.8	□□□□□ -0.52
EFNA1-204	ENST00000474413	RAB4A	P20338	218 aa		11.79	□□□□□ -0.52
EFNA1-204	ENST00000474413	PKIA	P61925	76 aa		11.79	□□□□□ -0.52
EFNA1-204	ENST00000474413	HAMP	P81172	84 aa		11.79	□□□□□ -0.52
EFNA1-204	ENST00000474413	KCNIP4	Q6PIL6	250 aa		11.79	□□□□□ -0.52
EFNA1-204	ENST00000474413	RMI2	Q96E14	147 aa		11.79	□□□□□ -0.52
EFNA1-204	ENST00000474413	SDHAF1	A6NFY7	115 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	AMT	P48728	403 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413		Q0VG73	95 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	COTL1	Q14019	142 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	SMIM15	Q7Z3B0	74 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413		Q8N1X5	172 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	BORCS7	Q96B45	105 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	NAT8B	Q9UHF3	227 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	COX11	Q9Y6N1	276 aa		11.78	□□□□□ -0.52
EFNA1-204	ENST00000474413	IGLV2-33	A0A075B6J2	118 aa	Predicted RBP	11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413	SMKR1	H3BMG3	65 aa		11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413	NCR2	O95944	276 aa		11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413	CRP	P02741	224 aa		11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413	C1orf43	Q9BWL3	253 aa		11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413	FAM30A	Q9NZY2	134 aa		11.77	□□□□□ -0.53
EFNA1-204	ENST00000474413		A0A1B0GUV1	79 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	TSHB	P01222	138 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	MIA	Q16674	131 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	LINC01620	Q4KN68	170 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	CLLU1	Q5K131	121 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	NRAC	Q8N912	160 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413	TMEM70	Q9BUB7	260 aa		11.76	□□□□□ -0.53
EFNA1-204	ENST00000474413		A0A1B0GXF2	115 aa		11.75	□□□□□ -0.53
EFNA1-204	ENST00000474413	REG3A	Q06141	175 aa		11.75	□□□□□ -0.53
EFNA1-204	ENST00000474413	RIG	Q13278	110 aa		11.75	□□□□□ -0.53
EFNA1-204	ENST00000474413	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.74	□□□□□ -0.53
EFNA1-204	ENST00000474413	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.74	□□□□□ -0.53
EFNA1-204	ENST00000474413	POLR2K	P53803	58 aa	Known RBP	11.74	□□□□□ -0.53
EFNA1-204	ENST00000474413		Q6ZSA8	131 aa		11.74	□□□□□ -0.53
EFNA1-204	ENST00000474413	MRAP2	Q96G30	205 aa		11.74	□□□□□ -0.53
EFNA1-204	ENST00000474413	TMEM242	Q9NWH2	141 aa		11.73	□□□□□ -0.53
EFNA1-204	ENST00000474413	IGLV10-54	A0A075B6I4	117 aa		11.72	□□□□□ -0.53
EFNA1-204	ENST00000474413	USP17L23	D6RBM5	183 aa		11.72	□□□□□ -0.53
EFNA1-204	ENST00000474413	HLA-DQA1	P01909	254 aa		11.72	□□□□□ -0.53
EFNA1-204	ENST00000474413	ESD	P10768	282 aa		11.72	□□□□□ -0.53
EFNA1-204	ENST00000474413	MRPL51	Q4U2R6	128 aa	Known RBP	11.72	□□□□□ -0.53
EFNA1-204	ENST00000474413	TRBV27	A0A0K0K1C4	114 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413		I3L3M4	83 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	APCS	P02743	223 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	ADCYAP1	P18509	176 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	FAM104B	Q5XKR9	115 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	MRPL54	Q6P161	138 aa	Known RBP	11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	ST20	Q9HBF5	79 aa		11.71	□□□□□ -0.53
EFNA1-204	ENST00000474413	CAMP	P49913	170 aa		11.7	□□□□□ -0.54
EFNA1-204	ENST00000474413	RAB14	P61106	215 aa		11.7	□□□□□ -0.54
EFNA1-204	ENST00000474413	UBE2L6	O14933	153 aa		11.69	□□□□□ -0.54
EFNA1-204	ENST00000474413	PRSS1	P07477	247 aa		11.69	□□□□□ -0.54
EFNA1-204	ENST00000474413	FGF6	P10767	208 aa		11.69	□□□□□ -0.54
EFNA1-204	ENST00000474413	PMCH	P20382	165 aa		11.68	□□□□□ -0.54
EFNA1-204	ENST00000474413	HBB	P68871	147 aa		11.68	□□□□□ -0.54
EFNA1-204	ENST00000474413		A0A1B0GW15	77 aa		11.67	□□□□□ -0.54
EFNA1-204	ENST00000474413		H7C423	109 aa		11.67	□□□□□ -0.54
EFNA1-204	ENST00000474413	SUMO2	P61956	95 aa	Known RBP	11.66	□□□□□ -0.54
EFNA1-204	ENST00000474413	PNRC1	Q12796	327 aa	Predicted RBP	11.66	□□□□□ -0.54
EFNA1-204	ENST00000474413	TRAV8-4	A0A0B4J246	113 aa		11.65	□□□□□ -0.54
EFNA1-204	ENST00000474413	SMR3B	P02814	79 aa	Predicted RBP	11.65	□□□□□ -0.54
EFNA1-204	ENST00000474413	SRRM2	Q9UQ35	2752 aa	Known RBP	11.65	□□□□□ -0.54
EFNA1-204	ENST00000474413	MYCBP2	O75592	4640 aa		11.64	□□□□□ -0.55
EFNA1-204	ENST00000474413	TRBV24-1	A0A075B6N3	115 aa		11.64	□□□□□ -0.55
EFNA1-204	ENST00000474413	RNASEK	Q6P5S7	137 aa	Known RBP	11.64	□□□□□ -0.55
EFNA1-204	ENST00000474413	MRPL52	Q86TS9	123 aa	Known RBP	11.64	□□□□□ -0.55
EFNA1-204	ENST00000474413	IGKV3OR2-268	A0A0C4DH90	116 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413		D6R8Y8	96 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	PPP1R2P9	O14990	202 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	NPY	P01303	97 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	ZNF25	P17030	456 aa	Predicted RBP	11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	C14orf177	Q52M58	125 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413		Q5VSD8	79 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	AMMECR1L	Q6DCA0	310 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	C15orf56	Q8N910	161 aa		11.63	□□□□□ -0.55
EFNA1-204	ENST00000474413	C7orf77	A4D0Y5	90 aa		11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	VCY	O14598	125 aa		11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	TNFRSF6B	O95407	300 aa		11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	SLPI	P03973	132 aa		11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	RPL32	P62910	135 aa	Known RBP	11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	ATP5L2	Q7Z4Y8	100 aa		11.62	□□□□□ -0.55
EFNA1-204	ENST00000474413	LINC00862	A6NCI5	91 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	GAGE12H	A6NDE8	117 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	EPM2A	B3EWF7	344 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	CKS2	P33552	79 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	UQCC3	Q6UW78	93 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	SCX	Q7RTU7	201 aa		11.61	□□□□□ -0.55
EFNA1-204	ENST00000474413	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	11.61	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms