RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 Q8N976 141 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 MRAP2Q96G30 205 aa10.08□□□□□ -0.8
LIMS1-212ENST00000474038 A0A1B0GXF2 115 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 EREGO14944 169 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 RPS10P46783 165 aaKnown RBP10.07□□□□□ -0.8
LIMS1-212ENST00000474038 RBX1P62877 108 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 FAM104BQ5XKR9 115 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 MRPL54Q6P161 138 aaKnown RBP10.07□□□□□ -0.8
LIMS1-212ENST00000474038 UBE2WQ96B02 151 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 ANAPC16Q96DE5 110 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 TMEM243Q9BU79 118 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 TM2D2Q9BX73 214 aa10.07□□□□□ -0.8
LIMS1-212ENST00000474038 LRCOL1A6NCL2 159 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 F8W036 122 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 SMKR1H3BMG3 65 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 NCR2O95944 276 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 ANGP03950 147 aaKnown RBP10.06□□□□□ -0.8
LIMS1-212ENST00000474038 AMTP48728 403 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 ST20Q9HBF5 79 aa10.06□□□□□ -0.8
LIMS1-212ENST00000474038 LINC00862A6NCI5 91 aa10.05□□□□□ -0.8
LIMS1-212ENST00000474038 HBBP68871 147 aa10.05□□□□□ -0.8
LIMS1-212ENST00000474038 MRPL51Q4U2R6 128 aaKnown RBP10.05□□□□□ -0.8
LIMS1-212ENST00000474038 ENHOQ6UWT2 76 aa10.05□□□□□ -0.8
LIMS1-212ENST00000474038 MAPKAPK5-AS1Q8N8E1 139 aa10.05□□□□□ -0.8
LIMS1-212ENST00000474038 TMEM70Q9BUB7 260 aa10.05□□□□□ -0.8
LIMS1-212ENST00000474038 I3L3M4 83 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 S100A8P05109 93 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 PMCHP20382 165 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 POLR2KP53803 58 aaKnown RBP10.04□□□□□ -0.8
LIMS1-212ENST00000474038 Q0VG73 95 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 NRACQ8N912 160 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 RMI2Q96E14 147 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 SEC11CQ9BY50 192 aa10.04□□□□□ -0.8
LIMS1-212ENST00000474038 IGKV2D-24A0A075B6R9 120 aa10.03□□□□□ -0.8
LIMS1-212ENST00000474038 ATP5L2Q7Z4Y8 100 aa10.03□□□□□ -0.8
LIMS1-212ENST00000474038 C20orf203Q8NBC4 194 aa10.03□□□□□ -0.8
LIMS1-212ENST00000474038 PGPEP1Q9NXJ5 209 aa10.03□□□□□ -0.8
LIMS1-212ENST00000474038 COX11Q9Y6N1 276 aa10.03□□□□□ -0.8
LIMS1-212ENST00000474038 TRBV27A0A0K0K1C4 114 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 A0A1B0GUV1 79 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 UBE2L6O14933 153 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 PPP1R17O96001 155 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 TSHBP01222 138 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 CRPP02741 224 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 APCSP02743 223 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 LINC00269Q8N2A0 174 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 PRR34Q9NV39 138 aa10.02□□□□□ -0.81
LIMS1-212ENST00000474038 IGLV4-60A0A075B6I1 120 aa10.01□□□□□ -0.81
LIMS1-212ENST00000474038 CKS2P33552 79 aa10.01□□□□□ -0.81
LIMS1-212ENST00000474038 WFDC2Q14508 124 aa10.01□□□□□ -0.81
LIMS1-212ENST00000474038 CLPSL2Q6UWE3 100 aa10.01□□□□□ -0.81
LIMS1-212ENST00000474038 TMEM242Q9NWH2 141 aa10.01□□□□□ -0.81
LIMS1-212ENST00000474038 SUMO2P61956 95 aaKnown RBP10□□□□□ -0.81
LIMS1-212ENST00000474038 MIAQ16674 131 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 C10orf91Q5T1B1 145 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 CDPF1Q6NVV7 123 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 Q8N814 137 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 BAALCQ8WXS3 180 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 C1orf43Q9BWL3 253 aa10□□□□□ -0.81
LIMS1-212ENST00000474038 TRBV24-1A0A075B6N3 115 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.99□□□□□ -0.81
LIMS1-212ENST00000474038 IGKV2-29A2NJV5 120 aaPredicted RBP9.99□□□□□ -0.81
LIMS1-212ENST00000474038 D6R8Y8 96 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 H7C423 109 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 VCYO14598 125 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 LECT2O14960 151 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 ESDP10768 282 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 REG3AQ06141 175 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 CTDSP1Q9GZU7 261 aa9.99□□□□□ -0.81
LIMS1-212ENST00000474038 TNFRSF6BO95407 300 aa9.98□□□□□ -0.81
LIMS1-212ENST00000474038 Q8N1X5 172 aa9.98□□□□□ -0.81
LIMS1-212ENST00000474038 BTF3L4Q96K17 158 aa9.98□□□□□ -0.81
LIMS1-212ENST00000474038 IMMP2LQ96T52 175 aa9.98□□□□□ -0.81
LIMS1-212ENST00000474038 C20orf78Q9BR46 151 aa9.98□□□□□ -0.81
LIMS1-212ENST00000474038 CARHSP1Q9Y2V2 147 aaKnown RBP9.98□□□□□ -0.81
LIMS1-212ENST00000474038 PPBPP02775 128 aa9.97□□□□□ -0.81
LIMS1-212ENST00000474038 FGF6P10767 208 aa9.97□□□□□ -0.81
LIMS1-212ENST00000474038 KRTAP10-1P60331 282 aa9.97□□□□□ -0.81
LIMS1-212ENST00000474038 AMMECR1LQ6DCA0 310 aa9.97□□□□□ -0.81
LIMS1-212ENST00000474038 KRTAP26-1Q6PEX3 210 aa9.97□□□□□ -0.81
LIMS1-212ENST00000474038 NPYP01303 97 aa9.96□□□□□ -0.82
LIMS1-212ENST00000474038 RPL32P62910 135 aaKnown RBP9.96□□□□□ -0.82
LIMS1-212ENST00000474038 RNASEKQ6P5S7 137 aaKnown RBP9.96□□□□□ -0.82
LIMS1-212ENST00000474038 NTN5Q8WTR8 489 aaPredicted RBP9.96□□□□□ -0.82
LIMS1-212ENST00000474038 IGLV10-54A0A075B6I4 117 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 IGLV5-52A0A0A0MRZ9 124 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 C7orf77A4D0Y5 90 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 PHOX2AO14813 284 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 FCER1GP30273 86 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 TMEM136Q6ZRR5 245 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 ORMDL3Q8N138 153 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 KIR2DL4Q99706 377 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 FAT1Q14517 4588 aa9.95□□□□□ -0.82
LIMS1-212ENST00000474038 TRAV8-4A0A0B4J246 113 aa9.94□□□□□ -0.82
LIMS1-212ENST00000474038 HLA-DQA1P01909 254 aa9.94□□□□□ -0.82
LIMS1-212ENST00000474038 ZNF25P17030 456 aaPredicted RBP9.94□□□□□ -0.82
LIMS1-212ENST00000474038 XGP55808 180 aa9.94□□□□□ -0.82
LIMS1-212ENST00000474038 CLRN3Q8NCR9 226 aa9.94□□□□□ -0.82
LIMS1-212ENST00000474038 PRELID3AQ96N28 172 aa9.94□□□□□ -0.82
LIMS1-212ENST00000474038 SMIM2Q9BVW6 85 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms