RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 IFITM2Q01629 132 aa12.11□□□□□ -0.47
CCDC88B-206ENST00000473405 DGAT2L7PQ6IED9 249 aa12.11□□□□□ -0.47
CCDC88B-206ENST00000473405 C9orf163Q8N9P6 203 aa12.11□□□□□ -0.47
CCDC88B-206ENST00000473405 NIT2Q9NQR4 276 aa12.11□□□□□ -0.47
CCDC88B-206ENST00000473405 A0A1B0GUV1 79 aa12.1□□□□□ -0.47
CCDC88B-206ENST00000473405 WDR73Q6P4I2 378 aa12.1□□□□□ -0.47
CCDC88B-206ENST00000473405 TEX261Q6UWH6 196 aa12.1□□□□□ -0.47
CCDC88B-206ENST00000473405 ALKAL2Q6UX46 152 aa12.1□□□□□ -0.47
CCDC88B-206ENST00000473405 RNASE7Q9H1E1 156 aaKnown RBP12.1□□□□□ -0.47
CCDC88B-206ENST00000473405 HMCN2Q8NDA2 5059 aa12.09□□□□□ -0.47
CCDC88B-206ENST00000473405 PANO1I0J062 215 aa12.09□□□□□ -0.47
CCDC88B-206ENST00000473405 TAGLN2P37802 199 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-206ENST00000473405 RPP21Q9H633 154 aaKnown RBP12.09□□□□□ -0.47
CCDC88B-206ENST00000473405 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.09□□□□□ -0.47
CCDC88B-206ENST00000473405 TRAV8-4A0A0B4J246 113 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 TWIST1Q15672 202 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 GATD1Q8NB37 220 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 CLRN3Q8NCR9 226 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 OCC1Q8TAD7 63 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 GTSF1Q8WW33 167 aa12.07□□□□□ -0.48
CCDC88B-206ENST00000473405 TRAV26-2A0A0B4J265 109 aa12.06□□□□□ -0.48
CCDC88B-206ENST00000473405 CNBPP62633 177 aaKnown RBP12.06□□□□□ -0.48
CCDC88B-206ENST00000473405 COTL1Q14019 142 aa12.06□□□□□ -0.48
CCDC88B-206ENST00000473405 SDIM1Q6ZPB5 146 aa12.06□□□□□ -0.48
CCDC88B-206ENST00000473405 AMTP48728 403 aa12.05□□□□□ -0.48
CCDC88B-206ENST00000473405 hDV102S1A0JD36 115 aa12.04□□□□□ -0.48
CCDC88B-206ENST00000473405 UBE2L6O14933 153 aa12.04□□□□□ -0.48
CCDC88B-206ENST00000473405 RPL37AP61513 92 aaKnown RBP12.04□□□□□ -0.48
CCDC88B-206ENST00000473405 HNRNPA3P51991 378 aaKnown RBP12.03□□□□□ -0.48
CCDC88B-206ENST00000473405 FOXA3P55318 350 aaPredicted RBP12.03□□□□□ -0.48
CCDC88B-206ENST00000473405 RPL39LQ96EH5 51 aaKnown RBP12.03□□□□□ -0.48
CCDC88B-206ENST00000473405 SLPIP03973 132 aa12.02□□□□□ -0.49
CCDC88B-206ENST00000473405 CIRBPQ14011 172 aaKnown RBP12.02□□□□□ -0.49
CCDC88B-206ENST00000473405 LYPD6BQ8NI32 183 aa12.02□□□□□ -0.49
CCDC88B-206ENST00000473405 TMEM250H0YL14 139 aa12.01□□□□□ -0.49
CCDC88B-206ENST00000473405 OXTP01178 125 aa12.01□□□□□ -0.49
CCDC88B-206ENST00000473405 C15orf56Q8N910 161 aa12□□□□□ -0.49
CCDC88B-206ENST00000473405 FAM231DQ6ZW35 169 aa11.99□□□□□ -0.49
CCDC88B-206ENST00000473405 IGHV3-64A0A075B6Q5 118 aa11.98□□□□□ -0.49
CCDC88B-206ENST00000473405 GATCO43716 136 aaKnown RBP11.98□□□□□ -0.49
CCDC88B-206ENST00000473405 NCR2O95944 276 aa11.98□□□□□ -0.49
CCDC88B-206ENST00000473405 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 IGKV2-29A2NJV5 120 aaPredicted RBP11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 GAGE12HA6NDE8 117 aa11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 SDHAF1A6NFY7 115 aa11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 BLOC1S1P78537 153 aa11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 SMIM15Q7Z3B0 74 aa11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 AP5S1Q9NUS5 200 aa11.97□□□□□ -0.49
CCDC88B-206ENST00000473405 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 IGKV3OR2-268A0A0C4DH90 116 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 A8MWL6 223 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 APCSP02743 223 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 CHTF8P0CG12 524 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 CT83Q5H943 113 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 SPACA4Q8TDM5 124 aa11.96□□□□□ -0.49
CCDC88B-206ENST00000473405 GAS8-AS1O95177 125 aa11.95□□□□□ -0.5
CCDC88B-206ENST00000473405 CEBPGP53567 150 aa11.95□□□□□ -0.5
CCDC88B-206ENST00000473405 AMMECR1LQ6DCA0 310 aa11.95□□□□□ -0.5
CCDC88B-206ENST00000473405 TRBV6-5A0A0K0K1A5 114 aa11.94□□□□□ -0.5
CCDC88B-206ENST00000473405 H7C423 109 aa11.94□□□□□ -0.5
CCDC88B-206ENST00000473405 FGF6P10767 208 aa11.94□□□□□ -0.5
CCDC88B-206ENST00000473405 CHCHD10Q8WYQ3 142 aaPredicted RBP11.94□□□□□ -0.5
CCDC88B-206ENST00000473405 A0A087WYN8 130 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 FAM231BA6NCW3 169 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 CLLU1Q5K131 121 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 RNASEKQ6P5S7 137 aaKnown RBP11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 LINC01551Q86U37 167 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 RNF185Q96GF1 192 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 SMIM7Q9BQ49 75 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 UBR4Q5T4S7 5183 aa11.93□□□□□ -0.5
CCDC88B-206ENST00000473405 I3L3M4 83 aa11.92□□□□□ -0.5
CCDC88B-206ENST00000473405 HIGD2BQ4VC39 106 aa11.92□□□□□ -0.5
CCDC88B-206ENST00000473405 GVQW2A0A096LPI5 108 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 HIGD1CA8MV81 97 aa11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 TSHBP01222 138 aa11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 ZNF25P17030 456 aaPredicted RBP11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 FOXI1Q12951 378 aa11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 SERTAD4-AS1Q5TG53 156 aa11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 CFAP161Q6P656 301 aa11.91□□□□□ -0.5
CCDC88B-206ENST00000473405 A0A1B0GUT8 65 aa11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 NDUFS6O75380 124 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 ESDP10768 282 aa11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 RPS10P46783 165 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 TSKUQ8WUA8 353 aa11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 TMEM191AQ9H0A3 160 aa11.9□□□□□ -0.5
CCDC88B-206ENST00000473405 PMCHP20382 165 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 COX6A2Q02221 97 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 OR5A1Q8NGJ0 315 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 BORCS7Q96B45 105 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 FAM210AQ96ND0 272 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 EIF5A2Q9GZV4 153 aaKnown RBP11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 TMEM242Q9NWH2 141 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 PLAC8Q9NZF1 115 aa11.89□□□□□ -0.51
CCDC88B-206ENST00000473405 ST20Q9HBF5 79 aa11.88□□□□□ -0.51
CCDC88B-206ENST00000473405 ZNF727A8MUV8 499 aa11.87□□□□□ -0.51
CCDC88B-206ENST00000473405 SRP19P09132 144 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-206ENST00000473405 POLR2KP53803 58 aaKnown RBP11.87□□□□□ -0.51
CCDC88B-206ENST00000473405 PRSS3P2Q8NHM4 247 aa11.87□□□□□ -0.51
CCDC88B-206ENST00000473405 DPH3Q96FX2 82 aa11.87□□□□□ -0.51
CCDC88B-206ENST00000473405 OSTCQ9NRP0 149 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 84.6 ms