RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 IGHV4OR15-8A0A075B7B6 117 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 A0A087WW49 117 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 K7ENP7 123 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 SMIM26A0A096LP01 95 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 CENPVL3A0A0U1RRI6 287 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 SPAG11BQ08648 103 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 NEXN-AS1Q8NBZ9 246 aa10.24□□□□□ -0.77
COL6A3-209ENST00000472056 IGHV7-81A0A0B4J1V7 117 aa10.23□□□□□ -0.77
COL6A3-209ENST00000472056 PROK2Q9HC23 129 aa10.23□□□□□ -0.77
COL6A3-209ENST00000472056 ANKRD17O75179 2603 aaKnown RBP10.23□□□□□ -0.77
COL6A3-209ENST00000472056 RBX1P62877 108 aa10.23□□□□□ -0.77
COL6A3-209ENST00000472056 C11orf1Q9H5F2 150 aa10.23□□□□□ -0.77
COL6A3-209ENST00000472056 LINC00173Q6ZV60 143 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 LINC00574Q9H8X3 128 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 LYPD6Q86Y78 171 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 ZNRD1Q9P1U0 126 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 LOXL1Q08397 574 aaPredicted RBP10.22□□□□□ -0.77
COL6A3-209ENST00000472056 FSTL3O95633 263 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 RPL39P62891 51 aaKnown RBP10.22□□□□□ -0.77
COL6A3-209ENST00000472056 NAV2Q8IVL1 2488 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 TMEM105Q8N8V8 129 aa10.22□□□□□ -0.77
COL6A3-209ENST00000472056 RUSC1-AS1Q66K80 236 aa10.21□□□□□ -0.77
COL6A3-209ENST00000472056 C11orf53Q8IXP5 236 aa10.21□□□□□ -0.77
COL6A3-209ENST00000472056 IGF2-ASQ6U949 168 aa10.21□□□□□ -0.78
COL6A3-209ENST00000472056 C5orf56Q8N8D9 126 aa10.21□□□□□ -0.78
COL6A3-209ENST00000472056 SMIM9A6NGZ8 99 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 RNF138Q8WVD3 245 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 PMAIP1Q13794 54 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 PYGO1Q9Y3Y4 419 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 GATA1P15976 413 aaPredicted RBP10.2□□□□□ -0.78
COL6A3-209ENST00000472056 PIK3CD-AS1Q5SR53 167 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 Q9HAA7 133 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 IGKV2D-26A0A0A0MRZ7 120 aa10.2□□□□□ -0.78
COL6A3-209ENST00000472056 SDIM1Q6ZPB5 146 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 A0A0J9YX75 114 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 P0C879 139 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 EIF4EBP1Q13541 118 aaPredicted RBP10.19□□□□□ -0.78
COL6A3-209ENST00000472056 C4orf3Q8WVX3 66 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 M0QXV9 152 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 MLST8Q9BVC4 326 aa10.19□□□□□ -0.78
COL6A3-209ENST00000472056 IGHV3-33P01772 117 aa10.18□□□□□ -0.78
COL6A3-209ENST00000472056 PATE2Q6UY27 113 aa10.18□□□□□ -0.78
COL6A3-209ENST00000472056 USP9XQ93008 2570 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-209ENST00000472056 Q6ZQT7 251 aa10.17□□□□□ -0.78
COL6A3-209ENST00000472056 TMEM223A0PJW6 202 aa10.17□□□□□ -0.78
COL6A3-209ENST00000472056 PRO0255Q9UI72 69 aa10.17□□□□□ -0.78
COL6A3-209ENST00000472056 A0A0J9YY99 117 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 LST1O00453 97 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 CFAP126Q5VTH2 177 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 YPEL4Q96NS1 127 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 ASPHD1Q5U4P2 390 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 ZFAND2AQ8N6M9 145 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 DHRS4-AS1Q9P1J3 65 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 NFE4Q86UQ8 179 aa10.16□□□□□ -0.78
COL6A3-209ENST00000472056 RNF223E7ERA6 249 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 IL17DQ8TAD2 202 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 TRIAP1O43715 76 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 TRAV7A0A075B6U4 112 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 IGLV2-14P01704 120 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 LINC00308Q8TCZ7 52 aa10.15□□□□□ -0.78
COL6A3-209ENST00000472056 A0A096LPF7 62 aa10.15□□□□□ -0.79
COL6A3-209ENST00000472056 LY6DQ14210 128 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 ENHOQ6UWT2 76 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 NCOR2Q9Y618 2525 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 MSRB1Q9NZV6 116 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 Q6JHZ5 121 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 IGLV2-23P01705 113 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 TRBV27A0A0K0K1C4 114 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 PLA2G2EQ9NZK7 142 aa10.14□□□□□ -0.79
COL6A3-209ENST00000472056 NCR3O14931 201 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 NRACQ8N912 160 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 Q8N9L7 120 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 LY6HO94772 140 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 Q8N9W7 124 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 IGLV10-54A0A075B6I4 117 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 IGHV3-30P01768 117 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 IGHV3-30-5P0DP03 117 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 COL4A6Q14031 1691 aa10.13□□□□□ -0.79
COL6A3-209ENST00000472056 ZNF503-AS2A6NEH8 195 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 MBD6Q96DN6 1003 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 IGLV1-47P01700 117 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 AJUBAQ96IF1 538 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 CNFNQ9BYD5 112 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 IGFL2Q6UWQ7 119 aa10.12□□□□□ -0.79
COL6A3-209ENST00000472056 TRBV6-5A0A0K0K1A5 114 aa10.11□□□□□ -0.79
COL6A3-209ENST00000472056 WT1P19544 449 aaPredicted RBP10.11□□□□□ -0.79
COL6A3-209ENST00000472056 FAM215AQ9Y5M1 114 aa10.11□□□□□ -0.79
COL6A3-209ENST00000472056 DIAPH2-AS1Q14236 149 aa10.11□□□□□ -0.79
COL6A3-209ENST00000472056 PRSS33Q8NF86 280 aa10.11□□□□□ -0.79
COL6A3-209ENST00000472056 Q96MF0 132 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 WFDC10BQ8IUB3 73 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 ZNF524Q96C55 264 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 RNF185Q96GF1 192 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 CCDC140Q96MF4 163 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 ZNF706Q9Y5V0 76 aaPredicted RBP10.1□□□□□ -0.79
COL6A3-209ENST00000472056 CTSZQ9UBR2 303 aa10.1□□□□□ -0.79
COL6A3-209ENST00000472056 MRGPRG-AS1Q2M3A8 158 aa10.09□□□□□ -0.79
COL6A3-209ENST00000472056 LINC00526Q96FQ7 95 aa10.09□□□□□ -0.79
COL6A3-209ENST00000472056 ODF3L1Q8IXM7 274 aa10.09□□□□□ -0.79
COL6A3-209ENST00000472056 ANKRD11Q6UB99 2663 aaPredicted RBP10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms