RNA–Protein interactions for RNA: ENST00000471037.1

SF3A1-206, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 3

Gene SF3A1, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-206ENST00000471037 TRBV6-5A0A0K0K1A5 114 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 TNFRSF6BO95407 300 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 NPYP01303 97 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 CRYBA4P53673 196 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 C20orf78Q9BR46 151 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 MAP1LC3AQ9H492 121 aa6.2□□□□□ -1.42
SF3A1-206ENST00000471037 PRSS47A8MTI9 375 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 PAX4O43316 350 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 GAS8-AS1O95177 125 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 RAB5BP61020 215 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 SUMO2P61956 95 aaKnown RBP6.19□□□□□ -1.42
SF3A1-206ENST00000471037 RPL32P62910 135 aaKnown RBP6.19□□□□□ -1.42
SF3A1-206ENST00000471037 RPL36AP83881 106 aaKnown RBP6.19□□□□□ -1.42
SF3A1-206ENST00000471037 CDPF1Q6NVV7 123 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 NEXN-AS1Q8NBZ9 246 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 RPL36ALQ969Q0 106 aaKnown RBP6.19□□□□□ -1.42
SF3A1-206ENST00000471037 RPL39LQ96EH5 51 aaKnown RBP6.19□□□□□ -1.42
SF3A1-206ENST00000471037 VSIG2Q96IQ7 327 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 ST20Q9HBF5 79 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 TNFRSF18Q9Y5U5 241 aa6.19□□□□□ -1.42
SF3A1-206ENST00000471037 FAT1Q14517 4588 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 TRBV7-3A0A075B6L6 115 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 A0A096LPF7 62 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 SIVA1O15304 175 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BKO60814 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BJP06899 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BOP23527 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BBP33778 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BDP58876 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BCP62807 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 Q0VG73 95 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST2H2BEQ16778 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.18□□□□□ -1.42
SF3A1-206ENST00000471037 C18orf32Q8TCD1 76 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BHQ93079 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BNQ99877 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 HIST1H2BMQ99879 126 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 TMEM70Q9BUB7 260 aa6.18□□□□□ -1.42
SF3A1-206ENST00000471037 NXT2Q9NPJ8 142 aaKnown RBP6.18□□□□□ -1.42
SF3A1-206ENST00000471037 DMBT1Q9UGM3 2413 aaPredicted RBP6.18□□□□□ -1.42
SF3A1-206ENST00000471037 SDHAF1A6NFY7 115 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 INAFM2P0DMQ5 153 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 GYPEP15421 78 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 PMCHP20382 165 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 POLR2KP53803 58 aaKnown RBP6.17□□□□□ -1.42
SF3A1-206ENST00000471037 XGP55808 180 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 SH2D6Q7Z4S9 175 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 SMIM2Q9BVW6 85 aa6.17□□□□□ -1.42
SF3A1-206ENST00000471037 TRBV27A0A0K0K1C4 114 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 GAGE12JA6NER3 117 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 K7EMI3 77 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 VCYO14598 125 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 EREGO14944 169 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 TCAPO15273 167 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 LINC00694P0DN24 101 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 UBE2D3P61077 147 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 UBE2D2P62837 147 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 GAGE1Q13065 139 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 GAGE4Q13068 117 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 GAGE5Q13069 117 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 MRPL23Q16540 153 aaKnown RBP6.16□□□□□ -1.42
SF3A1-206ENST00000471037 GAGE13Q4V321 117 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 Q5VSD8 79 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 DAZ4Q86SG3 579 aaKnown RBP6.16□□□□□ -1.42
SF3A1-206ENST00000471037 BAGE3Q86Y29 109 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 Q8N8P6 123 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 PRSS3P2Q8NHM4 247 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 DAZ3Q9NR90 486 aaKnown RBP6.16□□□□□ -1.42
SF3A1-206ENST00000471037 Q9UF83 564 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 ICOSQ9Y6W8 199 aa6.16□□□□□ -1.42
SF3A1-206ENST00000471037 LOC100131303A0A0U1RQF7 123 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 LOC389332A0A1B0GUA5 103 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 I3L3M4 83 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 IQCJQ1A5X6 159 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 FA2HQ7L5A8 372 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 NFE4Q86UQ8 179 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 KIR2DL4Q99706 377 aa6.15□□□□□ -1.42
SF3A1-206ENST00000471037 LINC01546A6NGU7 62 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 A6NJY4 79 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 LINC00614P0C842 121 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 IFI27P40305 119 aaPredicted RBP6.14□□□□□ -1.43
SF3A1-206ENST00000471037 COTL1Q14019 142 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 TMEM97Q5BJF2 176 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 COA6Q5JTJ3 125 aaKnown RBP6.14□□□□□ -1.43
SF3A1-206ENST00000471037 ATP6V0E2Q8NHE4 81 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 CHCHD1Q96BP2 118 aaKnown RBP6.14□□□□□ -1.43
SF3A1-206ENST00000471037 AP5S1Q9NUS5 200 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 MYCBP2O75592 4640 aa6.14□□□□□ -1.43
SF3A1-206ENST00000471037 A0A087WTM6 91 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 K7EP13 123 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 SERF1AO75920 110 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 S100A6P06703 90 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 FCER1GP30273 86 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 FUSP35637 526 aaKnown RBP eCLIP6.13□□□□□ -1.43
SF3A1-206ENST00000471037 NDUFA6P56556 154 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 KRTAP10-1P60331 282 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 ORMDL2Q53FV1 153 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 RNASEKQ6P5S7 137 aaKnown RBP6.13□□□□□ -1.43
SF3A1-206ENST00000471037 NEGR1Q7Z3B1 354 aa6.13□□□□□ -1.43
SF3A1-206ENST00000471037 NIT1Q86X76 327 aa6.13□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms