RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 hDV102S1A0JD36 115 aa11.21□□□□□ -0.61
COL7A1-208ENST00000470076 UBE2L6O14933 153 aa11.21□□□□□ -0.61
COL7A1-208ENST00000470076 BCL2P10415 239 aa11.21□□□□□ -0.61
COL7A1-208ENST00000470076 CTRLP40313 264 aa11.21□□□□□ -0.61
COL7A1-208ENST00000470076 AP5S1Q9NUS5 200 aa11.21□□□□□ -0.61
COL7A1-208ENST00000470076 HMCN2Q8NDA2 5059 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.2□□□□□ -0.62
COL7A1-208ENST00000470076 PANO1I0J062 215 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 COTL1Q14019 142 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 NUDT10Q8NFP7 164 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 NUDT11Q96G61 164 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 CNFNQ9BYD5 112 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 GFRA4Q9GZZ7 299 aa11.2□□□□□ -0.62
COL7A1-208ENST00000470076 TAGLN2P37802 199 aaKnown RBP11.19□□□□□ -0.62
COL7A1-208ENST00000470076 AMTP48728 403 aa11.19□□□□□ -0.62
COL7A1-208ENST00000470076 CIRBPQ14011 172 aaKnown RBP11.19□□□□□ -0.62
COL7A1-208ENST00000470076 IGHV3-64A0A075B6Q5 118 aa11.18□□□□□ -0.62
COL7A1-208ENST00000470076 HNRNPA3P51991 378 aaKnown RBP11.18□□□□□ -0.62
COL7A1-208ENST00000470076 TWIST1Q15672 202 aa11.18□□□□□ -0.62
COL7A1-208ENST00000470076 SLC51BQ86UW2 128 aa11.16□□□□□ -0.62
COL7A1-208ENST00000470076 RNF185Q96GF1 192 aa11.16□□□□□ -0.62
COL7A1-208ENST00000470076 RPP21Q9H633 154 aaKnown RBP11.16□□□□□ -0.62
COL7A1-208ENST00000470076 SLPIP03973 132 aa11.15□□□□□ -0.62
COL7A1-208ENST00000470076 TCTE3Q8IZS6 198 aa11.15□□□□□ -0.62
COL7A1-208ENST00000470076 GATD1Q8NB37 220 aa11.15□□□□□ -0.62
COL7A1-208ENST00000470076 CFAP161Q6P656 301 aa11.14□□□□□ -0.63
COL7A1-208ENST00000470076 SMIM15Q7Z3B0 74 aa11.14□□□□□ -0.63
COL7A1-208ENST00000470076 DPH3Q96FX2 82 aa11.14□□□□□ -0.63
COL7A1-208ENST00000470076 RNASE7Q9H1E1 156 aaKnown RBP11.14□□□□□ -0.63
COL7A1-208ENST00000470076 TRAV26-2A0A0B4J265 109 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 GAGE12HA6NDE8 117 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 K7EN84 100 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 NCR2O95944 276 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 OCC1Q8TAD7 63 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 PLA2G2DQ9UNK4 145 aa11.13□□□□□ -0.63
COL7A1-208ENST00000470076 A0A087WYN8 130 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 H7C423 109 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 AMMECR1LQ6DCA0 310 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 TEX261Q6UWH6 196 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 Q6ZRU5 148 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 C15orf56Q8N910 161 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 SPACA4Q8TDM5 124 aa11.12□□□□□ -0.63
COL7A1-208ENST00000470076 IGKV3OR2-268A0A0C4DH90 116 aa11.11□□□□□ -0.63
COL7A1-208ENST00000470076 CHTF8P0CG12 524 aa11.11□□□□□ -0.63
COL7A1-208ENST00000470076 Q6ZNX1 250 aa11.11□□□□□ -0.63
COL7A1-208ENST00000470076 GTSF1Q8WW33 167 aa11.11□□□□□ -0.63
COL7A1-208ENST00000470076 RPL39LQ96EH5 51 aaKnown RBP11.11□□□□□ -0.63
COL7A1-208ENST00000470076 APCSP02743 223 aa11.1□□□□□ -0.63
COL7A1-208ENST00000470076 SDHAF1A6NFY7 115 aa11.09□□□□□ -0.63
COL7A1-208ENST00000470076 TMEM250H0YL14 139 aa11.09□□□□□ -0.63
COL7A1-208ENST00000470076 RPS10P46783 165 aaKnown RBP11.09□□□□□ -0.63
COL7A1-208ENST00000470076 RNASEKQ6P5S7 137 aaKnown RBP11.09□□□□□ -0.63
COL7A1-208ENST00000470076 CHCHD10Q8WYQ3 142 aaPredicted RBP11.09□□□□□ -0.63
COL7A1-208ENST00000470076 PLAC8Q9NZF1 115 aa11.09□□□□□ -0.63
COL7A1-208ENST00000470076 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.08□□□□□ -0.64
COL7A1-208ENST00000470076 IGKV2-29A2NJV5 120 aaPredicted RBP11.08□□□□□ -0.64
COL7A1-208ENST00000470076 GATCO43716 136 aaKnown RBP11.08□□□□□ -0.64
COL7A1-208ENST00000470076 FGF6P10767 208 aa11.08□□□□□ -0.64
COL7A1-208ENST00000470076 FAM231DQ6ZW35 169 aa11.08□□□□□ -0.64
COL7A1-208ENST00000470076 A8MWL6 223 aa11.07□□□□□ -0.64
COL7A1-208ENST00000470076 ZNF25P17030 456 aaPredicted RBP11.07□□□□□ -0.64
COL7A1-208ENST00000470076 FOXA3P55318 350 aaPredicted RBP11.07□□□□□ -0.64
COL7A1-208ENST00000470076 COX6A2Q02221 97 aa11.07□□□□□ -0.64
COL7A1-208ENST00000470076 HIGD2BQ4VC39 106 aa11.07□□□□□ -0.64
COL7A1-208ENST00000470076 GVQW2A0A096LPI5 108 aaPredicted RBP11.06□□□□□ -0.64
COL7A1-208ENST00000470076 TRBV6-5A0A0K0K1A5 114 aa11.06□□□□□ -0.64
COL7A1-208ENST00000470076 I3L3M4 83 aa11.06□□□□□ -0.64
COL7A1-208ENST00000470076 NDUFS6O75380 124 aaKnown RBP11.06□□□□□ -0.64
COL7A1-208ENST00000470076 MT1HL1P0DM35 61 aa11.06□□□□□ -0.64
COL7A1-208ENST00000470076 C7orf33Q8WU49 177 aa11.06□□□□□ -0.64
COL7A1-208ENST00000470076 UBR4Q5T4S7 5183 aa11.06□□□□□ -0.64
COL7A1-208ENST00000470076 PMCHP20382 165 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 BLOC1S1P78537 153 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 CT83Q5H943 113 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 OR5A1Q8NGJ0 315 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 BTF3L4Q96K17 158 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 FAM210AQ96ND0 272 aa11.05□□□□□ -0.64
COL7A1-208ENST00000470076 PHOX2AO14813 284 aa11.04□□□□□ -0.64
COL7A1-208ENST00000470076 PRSS3P2Q8NHM4 247 aa11.04□□□□□ -0.64
COL7A1-208ENST00000470076 BORCS7Q96B45 105 aa11.04□□□□□ -0.64
COL7A1-208ENST00000470076 TMEM101Q96IK0 257 aa11.04□□□□□ -0.64
COL7A1-208ENST00000470076 FAM231BA6NCW3 169 aa11.03□□□□□ -0.64
COL7A1-208ENST00000470076 FOXI1Q12951 378 aa11.03□□□□□ -0.64
COL7A1-208ENST00000470076 MAJINQ3KP22 176 aa11.03□□□□□ -0.64
COL7A1-208ENST00000470076 IGKV2-24A0A0C4DH68 120 aa11.02□□□□□ -0.65
COL7A1-208ENST00000470076 ESDP10768 282 aa11.02□□□□□ -0.65
COL7A1-208ENST00000470076 ALKAL2Q6UX46 152 aa11.02□□□□□ -0.65
COL7A1-208ENST00000470076 LYPD6BQ8NI32 183 aa11.02□□□□□ -0.65
COL7A1-208ENST00000470076 ST20Q9HBF5 79 aa11.02□□□□□ -0.65
COL7A1-208ENST00000470076 XCL1P47992 114 aa11.01□□□□□ -0.65
COL7A1-208ENST00000470076 CEBPGP53567 150 aa11.01□□□□□ -0.65
COL7A1-208ENST00000470076 MRAP2Q96G30 205 aa11.01□□□□□ -0.65
COL7A1-208ENST00000470076 PKIGQ9Y2B9 76 aa11.01□□□□□ -0.65
COL7A1-208ENST00000470076 LINC00959A0A1B0GUT2 108 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 A0A1B0GUT8 65 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 CCL25O15444 150 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 TSHBP01222 138 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 STPG4Q8N801 248 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 TMEM191AQ9H0A3 160 aa11□□□□□ -0.65
COL7A1-208ENST00000470076 LINC00474Q9P2X8 69 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms