RNA–Protein interactions for RNA: ENST00000469439.1

SYNE1-219, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 630 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-219ENST00000469439 MSRB1Q9NZV6 116 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 HSPB8Q9UJY1 196 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 KIF25-AS1Q9Y6Z4 181 aa4.13□□□□□ -1.75
SYNE1-219ENST00000469439 DEFB131BA0A096LNP1 70 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 A0A0J9YWU9 116 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 TRBV27A0A0K0K1C4 114 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 PLAC8L1A1L4L8 177 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 SDHAF1A6NFY7 115 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 K7EP13 123 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 M0QY20 66 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 UBE2L6O14933 153 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 ATP5LO75964 103 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 LAGE3Q14657 143 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 COA6Q5JTJ3 125 aaKnown RBP4.12□□□□□ -1.75
SYNE1-219ENST00000469439 Q6ZQT7 251 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 NEGR1Q7Z3B1 354 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 Q8N8P6 123 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 RNF185Q96GF1 192 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 SMIM2Q9BVW6 85 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 AGRNO00468 2067 aa4.12□□□□□ -1.75
SYNE1-219ENST00000469439 TRBV25-1A0A075B6N4 114 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 TRAV8-6A0A0B4J262 113 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 C20orf202A1L168 122 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BKO60814 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 PRB2P02812 416 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BJP06899 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BOP23527 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BBP33778 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 CRYBA4P53673 196 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 CCL18P55774 89 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 NDUFA6P56556 154 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BDP58876 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 KRTAP10-7P60409 375 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BCP62807 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST2H2BEQ16778 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 KIAA1644Q3SXP7 199 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.11□□□□□ -1.75
SYNE1-219ENST00000469439 DGAT2L7PQ6IED9 249 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 UFSP1Q6NVU6 142 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 Q6ZN92 141 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 SLC25A29Q8N8R3 303 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 ATP6V0E2Q8NHE4 81 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 C18orf32Q8TCD1 76 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BHQ93079 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 TMEM101Q96IK0 257 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 ZNF479Q96JC4 524 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BNQ99877 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 HIST1H2BMQ99879 126 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 CHCHD7Q9BUK0 85 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 CYSLTR1Q9Y271 337 aa4.11□□□□□ -1.75
SYNE1-219ENST00000469439 TRAV9-2A0A087WT02 112 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 IGHV1-24A0A0C4DH33 117 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 CCL25O15444 150 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 HBDP02042 147 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 ESDP10768 282 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 HTN3P15516 51 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 ZNF25P17030 456 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-219ENST00000469439 POLR2KP53803 58 aaKnown RBP4.1□□□□□ -1.75
SYNE1-219ENST00000469439 LINC00315P59091 139 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 SEC11AP67812 179 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 C12orf74Q32Q52 190 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 RNASEKQ6P5S7 137 aaKnown RBP4.1□□□□□ -1.75
SYNE1-219ENST00000469439 NIT1Q86X76 327 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 ZNRF2Q8NHG8 242 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 TMEM70Q9BUB7 260 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 SPANXA1Q9NS26 97 aa4.1□□□□□ -1.75
SYNE1-219ENST00000469439 TENM1Q9UKZ4 2725 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 IGHV3-73A0A0B4J1V6 119 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 LOC389332A0A1B0GUA5 103 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 LINC01546A6NGU7 62 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-219ENST00000469439 DEFB4AO15263 64 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 LEPROTL1O95214 131 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 NPYP01303 97 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 IFI27P40305 119 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-219ENST00000469439 AMTP48728 403 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 UBE2D3P61077 147 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 UBE2D2P62837 147 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 AMMECR1LQ6DCA0 310 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 NEXN-AS1Q8NBZ9 246 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 PHLDA1Q8WV24 401 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-219ENST00000469439 TMEM141Q96I45 108 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 C2orf88Q9BSF0 95 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 TMEM243Q9BU79 118 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 TIMM21Q9BVV7 248 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 MAP1LC3CQ9BXW4 147 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 JPT2Q9H910 190 aa4.09□□□□□ -1.75
SYNE1-219ENST00000469439 CSDC2Q9Y534 153 aaKnown RBP4.09□□□□□ -1.75
SYNE1-219ENST00000469439 MGAM2Q2M2H8 2515 aa4.09□□□□□ -1.76
SYNE1-219ENST00000469439 A0A087WX48 190 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 TRBV6-8A0A0A6YYG3 113 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 TRAV26-2A0A0B4J265 109 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 GAGE12JA6NER3 117 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 PRM2P04554 102 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 GAGE1Q13065 139 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 GAGE4Q13068 117 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 GAGE5Q13069 117 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 IQCJQ1A5X6 159 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 LELP1Q5T871 98 aa4.08□□□□□ -1.76
SYNE1-219ENST00000469439 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms