RNA–Protein interactions for RNA: ENST00000468528.5

NXF3-204, Transcript of nuclear RNA export factor 3, human

TSL 5

Gene NXF3, Length 535 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NXF3-204	ENST00000468528		Q8N8P6	123 aa		4.98	□□□□□ -1.61
NXF3-204	ENST00000468528	PRSS3P2	Q8NHM4	247 aa		4.98	□□□□□ -1.61
NXF3-204	ENST00000468528	DNAH9	Q9NYC9	4486 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	TRBV25-1	A0A075B6N4	114 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	TRBV6-8	A0A0A6YYG3	113 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	LOC100131303	A0A0U1RQF7	123 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	LINC01546	A6NGU7	62 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528		K7EP13	123 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	GAS8-AS1	O95177	125 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	IQCJ	Q1A5X6	159 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	LELP1	Q5T871	98 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	FA2H	Q7L5A8	372 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	C18orf32	Q8TCD1	76 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	TMEM18	Q96B42	140 aa		4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	CHCHD1	Q96BP2	118 aa	Known RBP	4.97	□□□□□ -1.61
NXF3-204	ENST00000468528	HUWE1	Q7Z6Z7	4374 aa	Known RBP	4.96	□□□□□ -1.61
NXF3-204	ENST00000468528	IGLV2-18	A0A075B6J9	118 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	TRAV8-6	A0A0B4J262	113 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	IGHV1-24	A0A0C4DH33	117 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BK	O60814	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BJ	P06899	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	LINC00614	P0C842	121 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BO	P23527	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BB	P33778	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	AMT	P48728	403 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BD	P58876	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BC	P62807	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	LAGE3	Q14657	143 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST2H2BE	Q16778	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST2H2BF	Q5QNW6	126 aa	Predicted RBP	4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	LYPD5	Q6UWN5	251 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	BAGE3	Q86Y29	109 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BH	Q93079	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BN	Q99877	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	HIST1H2BM	Q99879	126 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	CHCHD7	Q9BUK0	85 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528		Q9UF83	564 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	APLN	Q9ULZ1	77 aa		4.96	□□□□□ -1.62
NXF3-204	ENST00000468528	LOC389332	A0A1B0GUA5	103 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	FAM229A	H3BQW9	127 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	UBE2L6	O14933	153 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	TSHB	P01222	138 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	NPS	P0C0P6	89 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	ZNF25	P17030	456 aa	Predicted RBP	4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	IFI27	P40305	119 aa	Predicted RBP	4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	COA6	Q5JTJ3	125 aa	Known RBP	4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	CASC10	Q5T4H9	136 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	UPK3B	Q9BT76	320 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	TMEM243	Q9BU79	118 aa		4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	MRPS16	Q9Y3D3	137 aa	Known RBP	4.95	□□□□□ -1.62
NXF3-204	ENST00000468528	IGHV3-38	A0A0C4DH36	116 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528		H3BS24	57 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	HSBP1	O75506	76 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	ESD	P10768	282 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	ESRG	Q1W209	222 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	ZFAND6	Q6FIF0	208 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	NIT1	Q86X76	327 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	C20orf203	Q8NBC4	194 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	CHCHD5	Q9BSY4	110 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	TIMM21	Q9BVV7	248 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	CYSLTR1	Q9Y271	337 aa		4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	CSDC2	Q9Y534	153 aa	Known RBP	4.94	□□□□□ -1.62
NXF3-204	ENST00000468528	TRAV9-2	A0A087WT02	112 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528		A0A087WX48	190 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528		A0A1B0GUV1	79 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	S100A6	P06703	90 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	MAL	P21145	153 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	PAPPA-AS1	Q5QFB9	102 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	LGALS9C	Q6DKI2	356 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	RNASEK	Q6P5S7	137 aa	Known RBP	4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	NTM-AS1	Q6ZSK4	140 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	MRPL52	Q86TS9	123 aa	Known RBP	4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	UBE2DNL	Q8IWF7	75 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	SPANXA1	Q9NS26	97 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	PYGO1	Q9Y3Y4	419 aa		4.93	□□□□□ -1.62
NXF3-204	ENST00000468528	SIVA1	O15304	175 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	SERF1A	O75920	110 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	HBD	P02042	147 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	DNAH10OS	P0CZ25	163 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	BTF3	P20290	206 aa	Known RBP	4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	LINC01556	Q5JQF7	62 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	AMMECR1L	Q6DCA0	310 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	DGAT2L7P	Q6IED9	249 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	C2orf66	Q6UXQ4	117 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	C10orf126	Q8N4M7	172 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	TOMM6	Q96B49	74 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	TMEM101	Q96IK0	257 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	PACRG	Q96M98	296 aa	Predicted RBP	4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	LINC00588	Q9Y4M8	146 aa		4.92	□□□□□ -1.62
NXF3-204	ENST00000468528	TENM2	Q9NT68	2774 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	TMEM262	E9PQX1	116 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	ATP5L	O75964	103 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	MRPS36	P82909	103 aa	Known RBP	4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	TTC32	Q5I0X7	151 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	ERAS	Q7Z444	233 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	OR5A1	Q8NGJ0	315 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	TMEM141	Q96I45	108 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	TIMM17A	Q99595	171 aa		4.91	□□□□□ -1.62
NXF3-204	ENST00000468528	BORCS8-MEF2B	H3BNR1	382 aa	Predicted RBP	4.9	□□□□□ -1.63
NXF3-204	ENST00000468528	CCL25	O15444	150 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms