RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 AP5S1Q9NUS5 200 aa13.46□□□□□ -0.25
COL9A3-207ENST00000467819 MED9Q9NWA0 146 aa13.46□□□□□ -0.25
COL9A3-207ENST00000467819 IGHV3-64A0A075B6Q5 118 aa13.45□□□□□ -0.26
COL9A3-207ENST00000467819 PDE6DO43924 150 aa13.45□□□□□ -0.26
COL9A3-207ENST00000467819 AMTP48728 403 aa13.45□□□□□ -0.26
COL9A3-207ENST00000467819 COTL1Q14019 142 aa13.44□□□□□ -0.26
COL9A3-207ENST00000467819 WDR73Q6P4I2 378 aa13.44□□□□□ -0.26
COL9A3-207ENST00000467819 DPH3Q96FX2 82 aa13.44□□□□□ -0.26
COL9A3-207ENST00000467819 UBR4Q5T4S7 5183 aa13.43□□□□□ -0.26
COL9A3-207ENST00000467819 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.43□□□□□ -0.26
COL9A3-207ENST00000467819 SLPIP03973 132 aa13.43□□□□□ -0.26
COL9A3-207ENST00000467819 CHTF8P0CG12 524 aa13.43□□□□□ -0.26
COL9A3-207ENST00000467819 SULT1A2P50226 295 aa13.43□□□□□ -0.26
COL9A3-207ENST00000467819 CIRBPQ14011 172 aaKnown RBP13.43□□□□□ -0.26
COL9A3-207ENST00000467819 EIF5AL1Q6IS14 154 aaKnown RBP13.43□□□□□ -0.26
COL9A3-207ENST00000467819 BIN3Q9NQY0 253 aa13.43□□□□□ -0.26
COL9A3-207ENST00000467819 NUDT10Q8NFP7 164 aa13.42□□□□□ -0.26
COL9A3-207ENST00000467819 NUDT11Q96G61 164 aa13.42□□□□□ -0.26
COL9A3-207ENST00000467819 IGKV3OR2-268A0A0C4DH90 116 aa13.41□□□□□ -0.26
COL9A3-207ENST00000467819 BCL2P10415 239 aa13.41□□□□□ -0.26
COL9A3-207ENST00000467819 CTRLP40313 264 aa13.41□□□□□ -0.26
COL9A3-207ENST00000467819 TWIST1Q15672 202 aa13.41□□□□□ -0.26
COL9A3-207ENST00000467819 C9orf62Q8N4C0 152 aa13.41□□□□□ -0.26
COL9A3-207ENST00000467819 A0A087WYN8 130 aa13.4□□□□□ -0.26
COL9A3-207ENST00000467819 TRAV26-2A0A0B4J265 109 aa13.4□□□□□ -0.26
COL9A3-207ENST00000467819 GATD1Q8NB37 220 aa13.4□□□□□ -0.26
COL9A3-207ENST00000467819 GAGE12HA6NDE8 117 aa13.39□□□□□ -0.27
COL9A3-207ENST00000467819 C15orf56Q8N910 161 aa13.39□□□□□ -0.27
COL9A3-207ENST00000467819 SPACA4Q8TDM5 124 aa13.39□□□□□ -0.27
COL9A3-207ENST00000467819 RNASE7Q9H1E1 156 aaKnown RBP13.39□□□□□ -0.27
COL9A3-207ENST00000467819 RNF185Q96GF1 192 aa13.38□□□□□ -0.27
COL9A3-207ENST00000467819 RPP21Q9H633 154 aaKnown RBP13.38□□□□□ -0.27
COL9A3-207ENST00000467819 CNFNQ9BYD5 112 aa13.37□□□□□ -0.27
COL9A3-207ENST00000467819 K7EN84 100 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 MT1HL1P0DM35 61 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 HIGD2BQ4VC39 106 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 AMMECR1LQ6DCA0 310 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 CFAP161Q6P656 301 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 Q6ZNX1 250 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 Q6ZRU5 148 aa13.36□□□□□ -0.27
COL9A3-207ENST00000467819 RPL39LQ96EH5 51 aaKnown RBP13.36□□□□□ -0.27
COL9A3-207ENST00000467819 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.34□□□□□ -0.27
COL9A3-207ENST00000467819 IGKV2-29A2NJV5 120 aaPredicted RBP13.34□□□□□ -0.27
COL9A3-207ENST00000467819 COX6A2Q02221 97 aa13.34□□□□□ -0.27
COL9A3-207ENST00000467819 RNASEKQ6P5S7 137 aaKnown RBP13.34□□□□□ -0.27
COL9A3-207ENST00000467819 OCC1Q8TAD7 63 aa13.34□□□□□ -0.27
COL9A3-207ENST00000467819 FOXA3P55318 350 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-207ENST00000467819 CHCHD10Q8WYQ3 142 aaPredicted RBP13.33□□□□□ -0.28
COL9A3-207ENST00000467819 PLAC8Q9NZF1 115 aa13.33□□□□□ -0.28
COL9A3-207ENST00000467819 PHOX2AO14813 284 aa13.32□□□□□ -0.28
COL9A3-207ENST00000467819 APCSP02743 223 aa13.32□□□□□ -0.28
COL9A3-207ENST00000467819 TAGLN2P37802 199 aaKnown RBP13.32□□□□□ -0.28
COL9A3-207ENST00000467819 RPS10P46783 165 aaKnown RBP13.32□□□□□ -0.28
COL9A3-207ENST00000467819 SMIM15Q7Z3B0 74 aa13.32□□□□□ -0.28
COL9A3-207ENST00000467819 SLC51BQ86UW2 128 aa13.32□□□□□ -0.28
COL9A3-207ENST00000467819 GTSF1Q8WW33 167 aa13.32□□□□□ -0.28
COL9A3-207ENST00000467819 IGKV2-24A0A0C4DH68 120 aa13.31□□□□□ -0.28
COL9A3-207ENST00000467819 NCR2O95944 276 aa13.31□□□□□ -0.28
COL9A3-207ENST00000467819 MAJINQ3KP22 176 aa13.31□□□□□ -0.28
COL9A3-207ENST00000467819 PRSS3P2Q8NHM4 247 aa13.31□□□□□ -0.28
COL9A3-207ENST00000467819 C7orf33Q8WU49 177 aa13.31□□□□□ -0.28
COL9A3-207ENST00000467819 SDHAF1A6NFY7 115 aa13.3□□□□□ -0.28
COL9A3-207ENST00000467819 FGF6P10767 208 aa13.3□□□□□ -0.28
COL9A3-207ENST00000467819 NDUFS6O75380 124 aaKnown RBP13.29□□□□□ -0.28
COL9A3-207ENST00000467819 H7C423 109 aa13.28□□□□□ -0.28
COL9A3-207ENST00000467819 GATCO43716 136 aaKnown RBP13.28□□□□□ -0.28
COL9A3-207ENST00000467819 TCTE3Q8IZS6 198 aa13.28□□□□□ -0.28
COL9A3-207ENST00000467819 GVQW2A0A096LPI5 108 aaPredicted RBP13.27□□□□□ -0.29
COL9A3-207ENST00000467819 TEX261Q6UWH6 196 aa13.27□□□□□ -0.29
COL9A3-207ENST00000467819 TNXBP22105 4242 aa13.27□□□□□ -0.29
COL9A3-207ENST00000467819 PMCHP20382 165 aa13.26□□□□□ -0.29
COL9A3-207ENST00000467819 FOXI1Q12951 378 aa13.26□□□□□ -0.29
COL9A3-207ENST00000467819 STPG4Q8N801 248 aa13.26□□□□□ -0.29
COL9A3-207ENST00000467819 I3L3M4 83 aa13.25□□□□□ -0.29
COL9A3-207ENST00000467819 XCL1P47992 114 aa13.25□□□□□ -0.29
COL9A3-207ENST00000467819 OR5A1Q8NGJ0 315 aa13.25□□□□□ -0.29
COL9A3-207ENST00000467819 LYPD6BQ8NI32 183 aa13.25□□□□□ -0.29
COL9A3-207ENST00000467819 BTF3L4Q96K17 158 aa13.25□□□□□ -0.29
COL9A3-207ENST00000467819 A0A096LNI7 61 aa13.24□□□□□ -0.29
COL9A3-207ENST00000467819 A8MWL6 223 aa13.24□□□□□ -0.29
COL9A3-207ENST00000467819 ZNF25P17030 456 aaPredicted RBP13.24□□□□□ -0.29
COL9A3-207ENST00000467819 TMEM101Q96IK0 257 aa13.24□□□□□ -0.29
COL9A3-207ENST00000467819 FAM231BA6NCW3 169 aa13.23□□□□□ -0.29
COL9A3-207ENST00000467819 GAS8-AS1O95177 125 aa13.23□□□□□ -0.29
COL9A3-207ENST00000467819 CEBPGP53567 150 aa13.23□□□□□ -0.29
COL9A3-207ENST00000467819 TRBV6-5A0A0K0K1A5 114 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 TMEM250H0YL14 139 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 CCL25O15444 150 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 PRR3P79522 188 aaKnown RBP13.22□□□□□ -0.29
COL9A3-207ENST00000467819 FAM231DQ6ZW35 169 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 LINC00526Q96FQ7 95 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 TMEM242Q9NWH2 141 aa13.22□□□□□ -0.29
COL9A3-207ENST00000467819 LINC00959A0A1B0GUT2 108 aa13.21□□□□□ -0.29
COL9A3-207ENST00000467819 TSHBP01222 138 aa13.21□□□□□ -0.29
COL9A3-207ENST00000467819 BORCS7Q96B45 105 aa13.21□□□□□ -0.29
COL9A3-207ENST00000467819 ST20Q9HBF5 79 aa13.21□□□□□ -0.29
COL9A3-207ENST00000467819 ESDP10768 282 aa13.2□□□□□ -0.3
COL9A3-207ENST00000467819 ALKAL2Q6UX46 152 aa13.2□□□□□ -0.3
COL9A3-207ENST00000467819 MRAP2Q96G30 205 aa13.2□□□□□ -0.3
COL9A3-207ENST00000467819 IGHV1-58A0A0C4DH39 117 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms