RNA–Protein interactions for RNA: ENST00000466532.1

COL9A3-206, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 539 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-206ENST00000466532 BCL2P10415 239 aa12.29□□□□□ -0.44
COL9A3-206ENST00000466532 SDIM1Q6ZPB5 146 aa12.29□□□□□ -0.44
COL9A3-206ENST00000466532 HMCN2Q8NDA2 5059 aa12.28□□□□□ -0.44
COL9A3-206ENST00000466532 CNBPP62633 177 aaKnown RBP12.28□□□□□ -0.44
COL9A3-206ENST00000466532 C9orf62Q8N4C0 152 aa12.28□□□□□ -0.44
COL9A3-206ENST00000466532 NUDT10Q8NFP7 164 aa12.28□□□□□ -0.44
COL9A3-206ENST00000466532 NUDT11Q96G61 164 aa12.28□□□□□ -0.44
COL9A3-206ENST00000466532 CTRLP40313 264 aa12.27□□□□□ -0.45
COL9A3-206ENST00000466532 AMTP48728 403 aa12.27□□□□□ -0.45
COL9A3-206ENST00000466532 HNRNPA3P51991 378 aaKnown RBP12.27□□□□□ -0.45
COL9A3-206ENST00000466532 COTL1Q14019 142 aa12.27□□□□□ -0.45
COL9A3-206ENST00000466532 TWIST1Q15672 202 aa12.26□□□□□ -0.45
COL9A3-206ENST00000466532 WDR73Q6P4I2 378 aa12.26□□□□□ -0.45
COL9A3-206ENST00000466532 AP5S1Q9NUS5 200 aa12.26□□□□□ -0.45
COL9A3-206ENST00000466532 IGHV3-64A0A075B6Q5 118 aa12.24□□□□□ -0.45
COL9A3-206ENST00000466532 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.24□□□□□ -0.45
COL9A3-206ENST00000466532 CNFNQ9BYD5 112 aa12.24□□□□□ -0.45
COL9A3-206ENST00000466532 RNASE7Q9H1E1 156 aaKnown RBP12.24□□□□□ -0.45
COL9A3-206ENST00000466532 RPP21Q9H633 154 aaKnown RBP12.24□□□□□ -0.45
COL9A3-206ENST00000466532 CIRBPQ14011 172 aaKnown RBP12.23□□□□□ -0.45
COL9A3-206ENST00000466532 SLC51BQ86UW2 128 aa12.23□□□□□ -0.45
COL9A3-206ENST00000466532 GATD1Q8NB37 220 aa12.23□□□□□ -0.45
COL9A3-206ENST00000466532 TRAV26-2A0A0B4J265 109 aa12.22□□□□□ -0.45
COL9A3-206ENST00000466532 K7EN84 100 aa12.22□□□□□ -0.45
COL9A3-206ENST00000466532 SLPIP03973 132 aa12.22□□□□□ -0.45
COL9A3-206ENST00000466532 TAGLN2P37802 199 aaKnown RBP12.22□□□□□ -0.45
COL9A3-206ENST00000466532 TCTE3Q8IZS6 198 aa12.22□□□□□ -0.45
COL9A3-206ENST00000466532 IGKV3OR2-268A0A0C4DH90 116 aa12.21□□□□□ -0.45
COL9A3-206ENST00000466532 GAGE12HA6NDE8 117 aa12.21□□□□□ -0.45
COL9A3-206ENST00000466532 CHTF8P0CG12 524 aa12.21□□□□□ -0.45
COL9A3-206ENST00000466532 OCC1Q8TAD7 63 aa12.21□□□□□ -0.45
COL9A3-206ENST00000466532 DPH3Q96FX2 82 aa12.21□□□□□ -0.45
COL9A3-206ENST00000466532 C15orf56Q8N910 161 aa12.2□□□□□ -0.46
COL9A3-206ENST00000466532 RPL39LQ96EH5 51 aaKnown RBP12.2□□□□□ -0.46
COL9A3-206ENST00000466532 AMMECR1LQ6DCA0 310 aa12.19□□□□□ -0.46
COL9A3-206ENST00000466532 Q6ZNX1 250 aa12.19□□□□□ -0.46
COL9A3-206ENST00000466532 SMIM15Q7Z3B0 74 aa12.19□□□□□ -0.46
COL9A3-206ENST00000466532 GTSF1Q8WW33 167 aa12.19□□□□□ -0.46
COL9A3-206ENST00000466532 PLA2G2DQ9UNK4 145 aa12.19□□□□□ -0.46
COL9A3-206ENST00000466532 A0A087WYN8 130 aa12.18□□□□□ -0.46
COL9A3-206ENST00000466532 CFAP161Q6P656 301 aa12.18□□□□□ -0.46
COL9A3-206ENST00000466532 SPACA4Q8TDM5 124 aa12.18□□□□□ -0.46
COL9A3-206ENST00000466532 RNF185Q96GF1 192 aa12.18□□□□□ -0.46
COL9A3-206ENST00000466532 NCR2O95944 276 aa12.17□□□□□ -0.46
COL9A3-206ENST00000466532 APCSP02743 223 aa12.17□□□□□ -0.46
COL9A3-206ENST00000466532 FOXA3P55318 350 aaPredicted RBP12.17□□□□□ -0.46
COL9A3-206ENST00000466532 RNASEKQ6P5S7 137 aaKnown RBP12.17□□□□□ -0.46
COL9A3-206ENST00000466532 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.16□□□□□ -0.46
COL9A3-206ENST00000466532 IGKV2-29A2NJV5 120 aaPredicted RBP12.16□□□□□ -0.46
COL9A3-206ENST00000466532 SDHAF1A6NFY7 115 aa12.15□□□□□ -0.46
COL9A3-206ENST00000466532 H7C423 109 aa12.15□□□□□ -0.46
COL9A3-206ENST00000466532 GATCO43716 136 aaKnown RBP12.15□□□□□ -0.46
COL9A3-206ENST00000466532 HIGD2BQ4VC39 106 aa12.15□□□□□ -0.46
COL9A3-206ENST00000466532 TEX261Q6UWH6 196 aa12.15□□□□□ -0.46
COL9A3-206ENST00000466532 CHCHD10Q8WYQ3 142 aaPredicted RBP12.15□□□□□ -0.46
COL9A3-206ENST00000466532 UBR4Q5T4S7 5183 aa12.14□□□□□ -0.47
COL9A3-206ENST00000466532 FGF6P10767 208 aa12.14□□□□□ -0.47
COL9A3-206ENST00000466532 RPS10P46783 165 aaKnown RBP12.14□□□□□ -0.47
COL9A3-206ENST00000466532 COX6A2Q02221 97 aa12.14□□□□□ -0.47
COL9A3-206ENST00000466532 Q6ZRU5 148 aa12.14□□□□□ -0.47
COL9A3-206ENST00000466532 TMEM250H0YL14 139 aa12.13□□□□□ -0.47
COL9A3-206ENST00000466532 FAM231DQ6ZW35 169 aa12.13□□□□□ -0.47
COL9A3-206ENST00000466532 PLAC8Q9NZF1 115 aa12.13□□□□□ -0.47
COL9A3-206ENST00000466532 A8MWL6 223 aa12.12□□□□□ -0.47
COL9A3-206ENST00000466532 I3L3M4 83 aa12.11□□□□□ -0.47
COL9A3-206ENST00000466532 NDUFS6O75380 124 aaKnown RBP12.11□□□□□ -0.47
COL9A3-206ENST00000466532 MT1HL1P0DM35 61 aa12.11□□□□□ -0.47
COL9A3-206ENST00000466532 PMCHP20382 165 aa12.11□□□□□ -0.47
COL9A3-206ENST00000466532 BLOC1S1P78537 153 aa12.11□□□□□ -0.47
COL9A3-206ENST00000466532 PRSS3P2Q8NHM4 247 aa12.11□□□□□ -0.47
COL9A3-206ENST00000466532 GVQW2A0A096LPI5 108 aaPredicted RBP12.1□□□□□ -0.47
COL9A3-206ENST00000466532 IGKV2-24A0A0C4DH68 120 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 PHOX2AO14813 284 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 ZNF25P17030 456 aaPredicted RBP12.1□□□□□ -0.47
COL9A3-206ENST00000466532 CEBPGP53567 150 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 MAJINQ3KP22 176 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 ALKAL2Q6UX46 152 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 OR5A1Q8NGJ0 315 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 C7orf33Q8WU49 177 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 BORCS7Q96B45 105 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 BTF3L4Q96K17 158 aa12.1□□□□□ -0.47
COL9A3-206ENST00000466532 TRBV6-5A0A0K0K1A5 114 aa12.09□□□□□ -0.47
COL9A3-206ENST00000466532 FAM231BA6NCW3 169 aa12.09□□□□□ -0.47
COL9A3-206ENST00000466532 FOXI1Q12951 378 aa12.09□□□□□ -0.47
COL9A3-206ENST00000466532 CT83Q5H943 113 aa12.09□□□□□ -0.47
COL9A3-206ENST00000466532 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
COL9A3-206ENST00000466532 XCL1P47992 114 aa12.08□□□□□ -0.48
COL9A3-206ENST00000466532 GAS8-AS1O95177 125 aa12.07□□□□□ -0.48
COL9A3-206ENST00000466532 ESDP10768 282 aa12.07□□□□□ -0.48
COL9A3-206ENST00000466532 ST20Q9HBF5 79 aa12.07□□□□□ -0.48
COL9A3-206ENST00000466532 TMEM242Q9NWH2 141 aa12.07□□□□□ -0.48
COL9A3-206ENST00000466532 LINC00959A0A1B0GUT2 108 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 CCL25O15444 150 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 TSHBP01222 138 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 AKAP14Q86UN6 197 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 STPG4Q8N801 248 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 LYPD6BQ8NI32 183 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 MRAP2Q96G30 205 aa12.06□□□□□ -0.48
COL9A3-206ENST00000466532 A0A096LNI7 61 aa12.05□□□□□ -0.48
COL9A3-206ENST00000466532 A0A1B0GUT8 65 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 114 ms