RNA–Protein interactions for RNA: ENST00000465339.5

COL28A1-206, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 3

Gene COL28A1, Length 722 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-206ENST00000465339 TMEM191AQ9H0A3 160 aa8.69□□□□□ -1.02
COL28A1-206ENST00000465339 NAT8BQ9UHF3 227 aa8.69□□□□□ -1.02
COL28A1-206ENST00000465339 TRAV26-2A0A0B4J265 109 aa8.68□□□□□ -1.02
COL28A1-206ENST00000465339 MPV17L2Q567V2 206 aa8.68□□□□□ -1.02
COL28A1-206ENST00000465339 ATRAIDQ6UW56 229 aa8.68□□□□□ -1.02
COL28A1-206ENST00000465339 UBE2WQ96B02 151 aa8.68□□□□□ -1.02
COL28A1-206ENST00000465339 SMIM27A0A1W2PRY6 76 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 CDK2AP2O75956 126 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 ANGP03950 147 aaKnown RBP8.67□□□□□ -1.02
COL28A1-206ENST00000465339 COTL1Q14019 142 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 CLLU1Q5K131 121 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 TMEM243Q9BU79 118 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 KRTAP17-1Q9BYP8 105 aa8.67□□□□□ -1.02
COL28A1-206ENST00000465339 IGKV2D-24A0A075B6R9 120 aa8.66□□□□□ -1.02
COL28A1-206ENST00000465339 CRPP02741 224 aa8.66□□□□□ -1.02
COL28A1-206ENST00000465339 RBX1P62877 108 aa8.66□□□□□ -1.02
COL28A1-206ENST00000465339 GAGE6Q13070 117 aa8.66□□□□□ -1.02
COL28A1-206ENST00000465339 Q8N976 141 aa8.66□□□□□ -1.02
COL28A1-206ENST00000465339 NTN5Q8WTR8 489 aaPredicted RBP8.66□□□□□ -1.02
COL28A1-206ENST00000465339 DYNC1H1Q14204 4646 aaKnown RBP8.66□□□□□ -1.02
COL28A1-206ENST00000465339 TRBV6-5A0A0K0K1A5 114 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 A0A1B0GUV1 79 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 A0A1B0GW15 77 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 NCR2O95944 276 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 RAB4AP20338 218 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 MALP21145 153 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 ENHOQ6UWT2 76 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 Q8N814 137 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 RPL39LQ96EH5 51 aaKnown RBP8.65□□□□□ -1.02
COL28A1-206ENST00000465339 MRAP2Q96G30 205 aa8.65□□□□□ -1.02
COL28A1-206ENST00000465339 SDHAF1A6NFY7 115 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 UBE2L6O14933 153 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 PPP1R2P9O14990 202 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 AMTP48728 403 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 PNRC1Q12796 327 aaPredicted RBP8.64□□□□□ -1.03
COL28A1-206ENST00000465339 MIAQ16674 131 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 MAPKAPK5-AS1Q8N8E1 139 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 RNF185Q96GF1 192 aa8.64□□□□□ -1.03
COL28A1-206ENST00000465339 IGLV5-52A0A0A0MRZ9 124 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 I3L3M4 83 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 PPP1R17O96001 155 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 PMCHP20382 165 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 GCSHP23434 173 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 FUSP35637 526 aaKnown RBP eCLIP8.63□□□□□ -1.03
COL28A1-206ENST00000465339 IFITM2Q01629 132 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 CFAP161Q6P656 301 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 AMN1Q8IY45 258 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 LINC00269Q8N2A0 174 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 BAALCQ8WXS3 180 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 C1orf43Q9BWL3 253 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 ST20Q9HBF5 79 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 PRR34Q9NV39 138 aa8.63□□□□□ -1.03
COL28A1-206ENST00000465339 H7C423 109 aa8.62□□□□□ -1.03
COL28A1-206ENST00000465339 S100A8P05109 93 aa8.62□□□□□ -1.03
COL28A1-206ENST00000465339 DEFB104AQ8WTQ1 72 aa8.62□□□□□ -1.03
COL28A1-206ENST00000465339 CAMPP49913 170 aa8.61□□□□□ -1.03
COL28A1-206ENST00000465339 FAM104BQ5XKR9 115 aa8.61□□□□□ -1.03
COL28A1-206ENST00000465339 UQCC3Q6UW78 93 aa8.61□□□□□ -1.03
COL28A1-206ENST00000465339 TMEM70Q9BUB7 260 aa8.61□□□□□ -1.03
COL28A1-206ENST00000465339 KIAA1109Q2LD37 5005 aa8.61□□□□□ -1.03
COL28A1-206ENST00000465339 TRAV8-4A0A0B4J246 113 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 LINC00862A6NCI5 91 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 LECT2O14960 151 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 GAS8-AS1O95177 125 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 APCSP02743 223 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 MT-ND4LP03901 98 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 POLR2KP53803 58 aaKnown RBP8.6□□□□□ -1.03
COL28A1-206ENST00000465339 REG3AQ06141 175 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 WFDC2Q14508 124 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 C20orf203Q8NBC4 194 aa8.6□□□□□ -1.03
COL28A1-206ENST00000465339 IGLV4-60A0A075B6I1 120 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 TRBV27A0A0K0K1C4 114 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 F8W036 122 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 VCYO14598 125 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 RPS10P46783 165 aaKnown RBP8.59□□□□□ -1.03
COL28A1-206ENST00000465339 KRTAP10-1P60331 282 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 HBBP68871 147 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 AMMECR1LQ6DCA0 310 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 KRTAP9-2Q9BYQ4 174 aa8.59□□□□□ -1.03
COL28A1-206ENST00000465339 A0A1B0GXF2 115 aa8.58□□□□□ -1.04
COL28A1-206ENST00000465339 MRPL51Q4U2R6 128 aaKnown RBP8.58□□□□□ -1.04
COL28A1-206ENST00000465339 C14orf177Q52M58 125 aa8.58□□□□□ -1.04
COL28A1-206ENST00000465339 MRPL54Q6P161 138 aaKnown RBP8.58□□□□□ -1.04
COL28A1-206ENST00000465339 CLPSL2Q6UWE3 100 aa8.58□□□□□ -1.04
COL28A1-206ENST00000465339 ATP5L2Q7Z4Y8 100 aa8.58□□□□□ -1.04
COL28A1-206ENST00000465339 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.58□□□□□ -1.04
COL28A1-206ENST00000465339 SMKR1H3BMG3 65 aa8.57□□□□□ -1.04
COL28A1-206ENST00000465339 TSHBP01222 138 aa8.57□□□□□ -1.04
COL28A1-206ENST00000465339 ESDP10768 282 aa8.57□□□□□ -1.04
COL28A1-206ENST00000465339 ZNF25P17030 456 aaPredicted RBP8.57□□□□□ -1.04
COL28A1-206ENST00000465339 CKS2P33552 79 aa8.57□□□□□ -1.04
COL28A1-206ENST00000465339 SUMO2P61956 95 aaKnown RBP8.57□□□□□ -1.04
COL28A1-206ENST00000465339 NRACQ8N912 160 aa8.57□□□□□ -1.04
COL28A1-206ENST00000465339 TRBV24-1A0A075B6N3 115 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-206ENST00000465339 IGKV2-29A2NJV5 120 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-206ENST00000465339 TMEM218A2RU14 115 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.56□□□□□ -1.04
COL28A1-206ENST00000465339 HLA-DQA1P01909 254 aa8.56□□□□□ -1.04
COL28A1-206ENST00000465339 FGF6P10767 208 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms