RNA–Protein interactions for RNA: ENST00000464956.1

USP40-211, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 185 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-211ENST00000464956 C1orf196B1AJZ1 125 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 B4DEV8 164 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 H7C423 109 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 SMIM17P0DL12 118 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 RAB3BP20337 219 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 RPL12P30050 165 aaKnown RBP1.17□□□□□ -2.22
USP40-211ENST00000464956 KIAA1644Q3SXP7 199 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 SMUG1Q53HV7 270 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 FAM74A1Q5RGS3 127 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 TMEM91Q6ZNR0 172 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 GOLT1AQ6ZVE7 132 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 Q75L30 129 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 C5orf38Q86SI9 138 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 MTURNQ8N3F0 131 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 NRACQ8N912 160 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 OR5C1Q8NGR4 320 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 GPX8Q8TED1 209 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 GLYATL2Q8WU03 294 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 ORAOV1Q8WV07 137 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 APH1BQ8WW43 257 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 HYLS1Q96M11 299 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 TIMM17AQ99595 171 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 MND1Q9BWT6 205 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 KRTAP4-6Q9BYQ5 205 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 ACOT13Q9NPJ3 140 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 MUC5ACP98088 5654 aa1.17□□□□□ -2.22
USP40-211ENST00000464956 IGKV2-28A0A075B6P5 120 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 TRAV1-2A0A0B4J238 106 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 PIGBOS1A0A0B4J2F0 54 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 A0A0G2JQZ4 141 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 TCRBV3S1A0A5B6 114 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 IGKV2-29A2NJV5 120 aaPredicted RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 A6NHS1 94 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 ZNF727A8MUV8 499 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 H3BP45 60 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 SYNGR2O43760 224 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 IGKV2D-28P01615 120 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 ARL14EPLP0DKL9 152 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 CAMLGP49069 296 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 TMBIM6P55061 237 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 NCS1P62166 190 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 RPL32P62910 135 aaKnown RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 NRARPQ7Z6K4 114 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 LYSMD2Q8IV50 215 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 PACRGLQ8N7B6 248 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 LINC00469Q8N7U9 141 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 PHYHIPLQ96FC7 376 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 XAGE1AQ9HD64 81 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 CCDC59Q9P031 241 aaKnown RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 RSL24D1Q9UHA3 163 aaKnown RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 ANAPC10Q9UM13 185 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 C14orf166Q9Y224 244 aaKnown RBP1.16□□□□□ -2.22
USP40-211ENST00000464956 ARL2-SNX15V9GYD0 113 aa1.16□□□□□ -2.22
USP40-211ENST00000464956 KRTAP4-8A0A0G2JLE6 195 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 LOC107984156A0A0G2JMH3 177 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 LOC100130705A0A1B0GUX0 176 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 PRSS47A8MTI9 375 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 FABP5P3A8MUU1 101 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 K7EQM0 130 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 UPK1BO75841 260 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 OR5AL1P0C617 328 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 HRES1P13985 223 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 FABP5Q01469 135 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 SPHARQ15513 63 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 CTF1Q16619 201 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 KRTAP19-8Q3LI54 63 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 DNAL1Q4LDG9 190 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 DNLZQ5SXM8 178 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 C9orf153Q5TBE3 101 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 MIC13Q5XKP0 118 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 ARL17AQ8IVW1 177 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 NKAPP1Q8N9T2 125 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 AP3S1Q92572 193 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 MGST2Q99735 147 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 SLC25A2Q9BXI2 301 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 EIF5A2Q9GZV4 153 aaKnown RBP1.15□□□□□ -2.23
USP40-211ENST00000464956 TMEM126AQ9H061 195 aa1.15□□□□□ -2.23
USP40-211ENST00000464956 TRAV13-1A0A0B4J241 112 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 SERTM2A0A1B0GWG4 89 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 SMIM30A4D0T7 59 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 GRIFINA4D1Z8 144 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 M0QY20 66 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 CTDSP2O14595 271 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 OR7C2O60412 319 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 APCSP02743 223 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 MGPP08493 103 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 LRRC37A5PQ49AS3 106 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 LINC00483Q53H64 154 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 RNASE10Q5GAN6 216 aaKnown RBP1.14□□□□□ -2.23
USP40-211ENST00000464956 SAPCD1Q5SSQ6 148 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 GAGE2AQ6NT46 116 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 Q86TA4 180 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 FXYD5Q96DB9 178 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 ATP6V1G3Q96LB4 118 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 ALKBH7Q9BT30 221 aaPredicted RBP1.14□□□□□ -2.23
USP40-211ENST00000464956 GGACTQ9BVM4 153 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 ZNF471Q9BX82 626 aaPredicted RBP1.14□□□□□ -2.23
USP40-211ENST00000464956 OTORQ9NRC9 128 aa1.14□□□□□ -2.23
USP40-211ENST00000464956 NUDT15Q9NV35 164 aa1.14□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms