RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 TMEM263Q8WUH6 116 aaKnown RBP14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 SPATA25Q9BR10 227 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 WNK1Q9H4A3 2382 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 MED12LQ86YW9 2145 aa14.34□□□□□ -0.11
CCDC88B-204ENST00000463837 Q8N976 141 aa14.33□□□□□ -0.11
CCDC88B-204ENST00000463837 SONP18583 2426 aaKnown RBP14.33□□□□□ -0.11
CCDC88B-204ENST00000463837 CAMK2N2Q96S95 79 aa14.33□□□□□ -0.12
CCDC88B-204ENST00000463837 C14orf132Q9NPU4 83 aa14.33□□□□□ -0.12
CCDC88B-204ENST00000463837 PRB2P02812 416 aaPredicted RBP14.33□□□□□ -0.12
CCDC88B-204ENST00000463837 PCNX3Q9H6A9 2034 aa14.33□□□□□ -0.12
CCDC88B-204ENST00000463837 TNRC6BQ9UPQ9 1833 aaKnown RBP14.33□□□□□ -0.12
CCDC88B-204ENST00000463837 PRO3102Q9H379 93 aa14.32□□□□□ -0.12
CCDC88B-204ENST00000463837 SMAD5-AS1Q9Y6J3 95 aa14.32□□□□□ -0.12
CCDC88B-204ENST00000463837 INSL3P51460 131 aa14.32□□□□□ -0.12
CCDC88B-204ENST00000463837 NDUFC2O95298 119 aa14.32□□□□□ -0.12
CCDC88B-204ENST00000463837 OTOGLQ3ZCN5 2332 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 ESM1Q9NQ30 184 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 HHLA3Q9XRX5 114 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 NREPQ16612 68 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 C5orf47Q569G3 176 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 IGLV4-3A0A075B6K6 122 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 TRBV6-5A0A0K0K1A5 114 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 CSPG4Q6UVK1 2322 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 IGHV3-33P01772 117 aa14.31□□□□□ -0.12
CCDC88B-204ENST00000463837 ETDCA0A1B0GVM5 59 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 NDUFA1O15239 70 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 LRRC75A-AS1Q8N1F1 130 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 ZFAND2AQ8N6M9 145 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 NRACQ8N912 160 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 Q8NA96 180 aa14.3□□□□□ -0.12
CCDC88B-204ENST00000463837 C10orf142B7Z368 130 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 H7C423 109 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 CLUHP3Q96NS8 147 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 TRBV27A0A0K0K1C4 114 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 C20orf173Q96LM9 149 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 PYGO1Q9Y3Y4 419 aa14.29□□□□□ -0.12
CCDC88B-204ENST00000463837 CFAP126Q5VTH2 177 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 ATP5EP2Q5VTU8 51 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 LINC01548A6NM66 108 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 TNFRSF13BO14836 293 aaPredicted RBP14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 RPL18AQ02543 176 aaKnown RBP14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 DIRC1Q969H9 104 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 K7EQG2 157 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 TIMM17BO60830 172 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 IGHV3-30P01768 117 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 IGHV3-30-5P0DP03 117 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 CNFNQ9BYD5 112 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 PRORYQ9H606 182 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 PRR14LQ5THK1 2151 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 NDUFS5O43920 106 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 TIRAPP58753 221 aa14.28□□□□□ -0.12
CCDC88B-204ENST00000463837 M0QY20 66 aa14.27□□□□□ -0.12
CCDC88B-204ENST00000463837 TRIAP1O43715 76 aa14.27□□□□□ -0.13
CCDC88B-204ENST00000463837 LMO4P61968 165 aa14.27□□□□□ -0.13
CCDC88B-204ENST00000463837 MAP6D1Q9H9H5 199 aa14.27□□□□□ -0.13
CCDC88B-204ENST00000463837 IMUPQ9GZP8 106 aa14.26□□□□□ -0.13
CCDC88B-204ENST00000463837 KLK5Q9Y337 293 aaPredicted RBP14.26□□□□□ -0.13
CCDC88B-204ENST00000463837 PTPN13Q12923 2485 aa14.26□□□□□ -0.13
CCDC88B-204ENST00000463837 PCDH15Q96QU1 1955 aa14.25□□□□□ -0.13
CCDC88B-204ENST00000463837 LINC00308Q8TCZ7 52 aa14.25□□□□□ -0.13
CCDC88B-204ENST00000463837 WFDC9Q8NEX5 89 aa14.25□□□□□ -0.13
CCDC88B-204ENST00000463837 ATG2AQ2TAZ0 1938 aa14.25□□□□□ -0.13
CCDC88B-204ENST00000463837 SPAG11BQ08648 103 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 TRAV23DV6A0A075B6W5 121 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 MP68P56378 58 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 IL17DQ8TAD2 202 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 C3orf22Q8N5N4 141 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 CDKN2A-AS1Q9UH64 79 aa14.24□□□□□ -0.13
CCDC88B-204ENST00000463837 LINC00467Q9BRT7 94 aa14.23□□□□□ -0.13
CCDC88B-204ENST00000463837 SDIM1Q6ZPB5 146 aa14.23□□□□□ -0.13
CCDC88B-204ENST00000463837 UFSP1Q6NVU6 142 aa14.22□□□□□ -0.13
CCDC88B-204ENST00000463837 URB1-AS1Q96HZ7 61 aa14.22□□□□□ -0.13
CCDC88B-204ENST00000463837 PRO0255Q9UI72 69 aa14.21□□□□□ -0.13
CCDC88B-204ENST00000463837 F8W735 103 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-204ENST00000463837 HIGD2BQ4VC39 106 aa14.21□□□□□ -0.13
CCDC88B-204ENST00000463837 IBA57-AS1B1ANH7 110 aa14.21□□□□□ -0.14
CCDC88B-204ENST00000463837 Q8N6K4 173 aa14.21□□□□□ -0.14
CCDC88B-204ENST00000463837 PIEZO1Q92508 2521 aa14.2□□□□□ -0.14
CCDC88B-204ENST00000463837 MYO18BQ8IUG5 2567 aa14.2□□□□□ -0.14
CCDC88B-204ENST00000463837 C22orf34Q6ZV56 151 aa14.2□□□□□ -0.14
CCDC88B-204ENST00000463837 FAM222AQ5U5X8 452 aa14.2□□□□□ -0.14
CCDC88B-204ENST00000463837 UPK3BQ9BT76 320 aa14.19□□□□□ -0.14
CCDC88B-204ENST00000463837 DEFB135Q30KP9 77 aa14.19□□□□□ -0.14
CCDC88B-204ENST00000463837 DNAJC9-AS1A6NH13 148 aa14.18□□□□□ -0.14
CCDC88B-204ENST00000463837 COX7BP24311 80 aa14.18□□□□□ -0.14
CCDC88B-204ENST00000463837 MRPS12O15235 138 aaKnown RBP14.18□□□□□ -0.14
CCDC88B-204ENST00000463837 C20orf197Q8N268 126 aa14.18□□□□□ -0.14
CCDC88B-204ENST00000463837 POLR2KP53803 58 aaKnown RBP14.17□□□□□ -0.14
CCDC88B-204ENST00000463837 KIAA1549Q9HCM3 1950 aa14.17□□□□□ -0.14
CCDC88B-204ENST00000463837 LST1O00453 97 aa14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 DEFB4AO15263 64 aa14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 RNASE3P12724 160 aaKnown RBP14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 C11orf21Q9P2W6 132 aa14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 KLK12Q9UKR0 248 aa14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 TSHBP01222 138 aa14.16□□□□□ -0.14
CCDC88B-204ENST00000463837 TANC2Q9HCD6 1990 aa14.15□□□□□ -0.14
CCDC88B-204ENST00000463837 Q6Q795 121 aa14.15□□□□□ -0.14
CCDC88B-204ENST00000463837 BRK1Q8WUW1 75 aa14.15□□□□□ -0.14
CCDC88B-204ENST00000463837 Q6ZTI0 123 aa14.14□□□□□ -0.15
CCDC88B-204ENST00000463837 KLLNB2CW77 178 aa14.14□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms