RNA–Protein interactions for RNA: ENST00000463684.1

SMC1A-204, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 2

Gene SMC1A, Length 880 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-204ENST00000463684 MLST8Q9BVC4 326 aa8.94□□□□□ -0.98
SMC1A-204ENST00000463684 TPPP3Q9BW30 176 aa8.94□□□□□ -0.98
SMC1A-204ENST00000463684 NIT2Q9NQR4 276 aa8.94□□□□□ -0.98
SMC1A-204ENST00000463684 PAGE4O60829 102 aa8.93□□□□□ -0.98
SMC1A-204ENST00000463684 KRTAP9-2Q9BYQ4 174 aa8.93□□□□□ -0.98
SMC1A-204ENST00000463684 AMMECR1LQ6DCA0 310 aa8.92□□□□□ -0.98
SMC1A-204ENST00000463684 ZNF664Q8N3J9 261 aa8.92□□□□□ -0.98
SMC1A-204ENST00000463684 KRTAP3-3Q9BYR6 98 aa8.92□□□□□ -0.98
SMC1A-204ENST00000463684 KRTAP3-2Q9BYR7 98 aa8.92□□□□□ -0.98
SMC1A-204ENST00000463684 CACNG7P62955 275 aa8.91□□□□□ -0.98
SMC1A-204ENST00000463684 FER1L6-AS1Q8NA97 138 aa8.91□□□□□ -0.98
SMC1A-204ENST00000463684 A0A0U1RQV1 116 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 SCO2A0A1W2PP80 73 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 PFDN1O60925 122 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 Q5BKY6 102 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 CARD19Q96LW7 228 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 PSORS1C2Q9UIG4 136 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 ALG5Q9Y673 324 aa8.9□□□□□ -0.98
SMC1A-204ENST00000463684 RNASEKQ6P5S7 137 aaKnown RBP8.89□□□□□ -0.99
SMC1A-204ENST00000463684 TMUB2Q71RG4 321 aa8.89□□□□□ -0.99
SMC1A-204ENST00000463684 MED28Q9H204 178 aa8.89□□□□□ -0.99
SMC1A-204ENST00000463684 FXYD6-FXYD2A0A087WZ82 144 aa8.88□□□□□ -0.99
SMC1A-204ENST00000463684 TRAV26-2A0A0B4J265 109 aa8.88□□□□□ -0.99
SMC1A-204ENST00000463684 TRGC1P0CF51 173 aa8.88□□□□□ -0.99
SMC1A-204ENST00000463684 IGLC6P0CF74 106 aa8.88□□□□□ -0.99
SMC1A-204ENST00000463684 RPS20P60866 119 aaKnown RBP8.88□□□□□ -0.99
SMC1A-204ENST00000463684 FOXI1Q12951 378 aa8.88□□□□□ -0.99
SMC1A-204ENST00000463684 IGHV1-58A0A0C4DH39 117 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 F2Z2F3 143 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 MT-ND6P03923 174 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 XCL1P47992 114 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 OR2D3Q8NGH3 330 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 LINC00526Q96FQ7 95 aa8.87□□□□□ -0.99
SMC1A-204ENST00000463684 H7C423 109 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 ZNF561-AS1K7EIQ3 104 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 PTTG1IPP53801 180 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 SYCNQ0VAF6 134 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 GAGE2BQ13066 116 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 SFT2D1Q8WV19 159 aa8.86□□□□□ -0.99
SMC1A-204ENST00000463684 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.85□□□□□ -0.99
SMC1A-204ENST00000463684 IGKV2-29A2NJV5 120 aaPredicted RBP8.85□□□□□ -0.99
SMC1A-204ENST00000463684 XKRY2A2RUG3 117 aa8.85□□□□□ -0.99
SMC1A-204ENST00000463684 GIPP09681 153 aaPredicted RBP8.85□□□□□ -0.99
SMC1A-204ENST00000463684 NTF3P20783 257 aa8.85□□□□□ -0.99
SMC1A-204ENST00000463684 PRR26Q8N8Z3 221 aa8.85□□□□□ -0.99
SMC1A-204ENST00000463684 OR5A1Q8NGJ0 315 aa8.85□□□□□ -0.99
SMC1A-204ENST00000463684 MUC2Q02817 5179 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 LOC107984640A0A0U1RRK4 108 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 A0A1B0GV50 99 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 CCL25O15444 150 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 NCR2O95944 276 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 FGF6P10767 208 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 RPL35P42766 123 aaKnown RBP8.84□□□□□ -0.99
SMC1A-204ENST00000463684 C1orf137Q5JT78 98 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 ISOC2Q96AB3 205 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 TMEM101Q96IK0 257 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 BTF3L4Q96K17 158 aa8.84□□□□□ -0.99
SMC1A-204ENST00000463684 LINC00959A0A1B0GUT2 108 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 A0A1W2PNN7 141 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 APCSP02743 223 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 LYZL1Q6UWQ5 148 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 KCNRGQ8N5I3 272 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 MBD3L1Q8WWY6 194 aa8.83□□□□□ -1
SMC1A-204ENST00000463684 IFNA1P01562 189 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 ZNF25P17030 456 aaPredicted RBP8.82□□□□□ -1
SMC1A-204ENST00000463684 PRR4Q16378 134 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 Q6ZNX1 250 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 FAM213BQ8TBF2 198 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 DIRC1Q969H9 104 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 CYTL1Q9NRR1 136 aa8.82□□□□□ -1
SMC1A-204ENST00000463684 CAMPP49913 170 aa8.81□□□□□ -1
SMC1A-204ENST00000463684 SS18Q15532 418 aa8.81□□□□□ -1
SMC1A-204ENST00000463684 GATD1Q8NB37 220 aa8.81□□□□□ -1
SMC1A-204ENST00000463684 C19orf71A6NCJ1 209 aa8.8□□□□□ -1
SMC1A-204ENST00000463684 TWIST1Q15672 202 aa8.8□□□□□ -1
SMC1A-204ENST00000463684 C9orf116Q5BN46 136 aaPredicted RBP8.8□□□□□ -1
SMC1A-204ENST00000463684 UMAD1C9J7I0 102 aa8.79□□□□□ -1
SMC1A-204ENST00000463684 EIF5AP63241 154 aaKnown RBP8.79□□□□□ -1
SMC1A-204ENST00000463684 CENPWQ5EE01 88 aa8.79□□□□□ -1
SMC1A-204ENST00000463684 EIF5AL1Q6IS14 154 aaKnown RBP8.79□□□□□ -1
SMC1A-204ENST00000463684 CD164L2Q6UWJ8 174 aa8.79□□□□□ -1
SMC1A-204ENST00000463684 C9orf62Q8N4C0 152 aa8.79□□□□□ -1
SMC1A-204ENST00000463684 IGLV4-69A0A075B6H9 119 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 ARPC5O15511 151 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 IGLV7-43P04211 117 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 BCL2P10415 239 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 PMCHP20382 165 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 MALP21145 153 aa8.78□□□□□ -1
SMC1A-204ENST00000463684 PHF5AQ7RTV0 110 aaKnown RBP8.78□□□□□ -1
SMC1A-204ENST00000463684 RPL39LQ96EH5 51 aaKnown RBP8.78□□□□□ -1
SMC1A-204ENST00000463684 IGLV1-50A0A075B6I6 118 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 KRTAP9-6A0A140TA67 174 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 SDHAF1A6NFY7 115 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 APOMO95445 188 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 H2AFB1P0C5Y9 115 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 GNG4P50150 75 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 TEX261Q6UWH6 196 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 SMIM15Q7Z3B0 74 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 NUP35Q8NFH5 326 aa8.77□□□□□ -1.01
SMC1A-204ENST00000463684 SMIM12Q96EX1 92 aa8.77□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 99.3 ms