RNA–Protein interactions for RNA: ENST00000462613.1

SF3B1-206, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 3

Gene SF3B1, Length 141 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-206ENST00000462613 TMEM70Q9BUB7 260 aa4.36□□□□□ -1.71
SF3B1-206ENST00000462613 GNB1LQ9BYB4 327 aa4.36□□□□□ -1.71
SF3B1-206ENST00000462613 MAP1LC3AQ9H492 121 aa4.36□□□□□ -1.71
SF3B1-206ENST00000462613 SMCO4Q9NRQ5 59 aa4.36□□□□□ -1.71
SF3B1-206ENST00000462613 TRBV24-1A0A075B6N3 115 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 TRBV27A0A0K0K1C4 114 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 SMKR1H3BMG3 65 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 H7C423 109 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 EREGO14944 169 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 PSCAO43653 123 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 ANGP03950 147 aaKnown RBP4.35□□□□□ -1.71
SF3B1-206ENST00000462613 G0S2P27469 103 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 RPS10P46783 165 aaKnown RBP4.35□□□□□ -1.71
SF3B1-206ENST00000462613 RPL32P62910 135 aaKnown RBP4.35□□□□□ -1.71
SF3B1-206ENST00000462613 Q0VG73 95 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 DGAT2L7PQ6IED9 249 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 Q6ZR54 194 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 NIT1Q86X76 327 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 TMEM101Q96IK0 257 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 TM2D2Q9BX73 214 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 COX11Q9Y6N1 276 aa4.35□□□□□ -1.71
SF3B1-206ENST00000462613 IBA57-AS1B1ANH7 110 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 NPYP01303 97 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 ZNF25P17030 456 aaPredicted RBP4.34□□□□□ -1.71
SF3B1-206ENST00000462613 POLR2KP53803 58 aaKnown RBP4.34□□□□□ -1.71
SF3B1-206ENST00000462613 FABP9Q0Z7S8 132 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 GAGE6Q13070 117 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 RNASEKQ6P5S7 137 aaKnown RBP4.34□□□□□ -1.71
SF3B1-206ENST00000462613 NTM-AS1Q6ZSK4 140 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 NRACQ8N912 160 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 SMIM2Q9BVW6 85 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 NXT2Q9NPJ8 142 aaKnown RBP4.34□□□□□ -1.71
SF3B1-206ENST00000462613 KLK12Q9UKR0 248 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 TRAPPC1Q9Y5R8 145 aa4.34□□□□□ -1.71
SF3B1-206ENST00000462613 STARD9Q9P2P6 4700 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 A0A1B0GUV1 79 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 K7EMI3 77 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 MPV17L2Q567V2 206 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 ATRAIDQ6UW56 229 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 OR5A1Q8NGJ0 315 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 PRSS3P2Q8NHM4 247 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 UBE2WQ96B02 151 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 C1orf43Q9BWL3 253 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 MRPL18Q9H0U6 180 aaKnown RBP4.33□□□□□ -1.72
SF3B1-206ENST00000462613 Q9HAA7 133 aa4.33□□□□□ -1.72
SF3B1-206ENST00000462613 TGIF2-C20orf24A0A0A6YYL0 155 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 LOC389332A0A1B0GUA5 103 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 PRSS29PA6NIE9 313 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 LINC01549A6NIU2 74 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 GAS8-AS1O95177 125 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 TSHBP01222 138 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 FGF6P10767 208 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 RBX1P62877 108 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 MIAQ16674 131 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 KIAA1644Q3SXP7 199 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 ORMDL2Q53FV1 153 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 DEFB104AQ8WTQ1 72 aa4.32□□□□□ -1.72
SF3B1-206ENST00000462613 IGKV2D-24A0A075B6R9 120 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-206ENST00000462613 TRAV8-4A0A0B4J246 113 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 IGKV2-29A2NJV5 120 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-206ENST00000462613 PRSS47A8MTI9 375 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 ESDP10768 282 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 S100A1P23297 94 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 IFI27P40305 119 aaPredicted RBP4.31□□□□□ -1.72
SF3B1-206ENST00000462613 RAB5BP61020 215 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 REG3AQ06141 175 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 FA2HQ7L5A8 372 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 CBLN2Q8IUK8 224 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 LINC00269Q8N2A0 174 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 Q8N8P6 123 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 Q8N976 141 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 KRTAP1-5Q9BYS1 174 aa4.31□□□□□ -1.72
SF3B1-206ENST00000462613 IGKV3OR2-268A0A0C4DH90 116 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 SS18Q15532 418 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 PAPPA-AS1Q5QFB9 102 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 CLPSL2Q6UWE3 100 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 Q6ZN92 141 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 MRPL52Q86TS9 123 aaKnown RBP4.3□□□□□ -1.72
SF3B1-206ENST00000462613 Q8N3U1 123 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 C20orf203Q8NBC4 194 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 ALKBH7Q9BT30 221 aaPredicted RBP4.3□□□□□ -1.72
SF3B1-206ENST00000462613 TIMM21Q9BVV7 248 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 SPANXA1Q9NS26 97 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 CYSLTR1Q9Y271 337 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 CSDC2Q9Y534 153 aaKnown RBP4.3□□□□□ -1.72
SF3B1-206ENST00000462613 ALMS1Q8TCU4 4167 aa4.3□□□□□ -1.72
SF3B1-206ENST00000462613 DYNC2H1Q8NCM8 4307 aaKnown RBP4.29□□□□□ -1.72
SF3B1-206ENST00000462613 IGLV4-60A0A075B6I1 120 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 RTL8CO15255 209 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 CCL25O15444 150 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 C14orf177Q52M58 125 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 ZNF664Q8N3J9 261 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 C2orf88Q9BSF0 95 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 AP5S1Q9NUS5 200 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 PRR34Q9NV39 138 aa4.29□□□□□ -1.72
SF3B1-206ENST00000462613 C2orf66Q6UXQ4 117 aa4.28□□□□□ -1.72
SF3B1-206ENST00000462613 UBE2D4Q9Y2X8 147 aa4.28□□□□□ -1.72
SF3B1-206ENST00000462613 PLECQ15149 4684 aaKnown RBP4.27□□□□□ -1.73
SF3B1-206ENST00000462613 IGLV10-54A0A075B6I4 117 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms