RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 IGHV3-38A0A0C4DH36 116 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 IGKV2-29A2NJV5 120 aaPredicted RBP8.61□□□□□ -1.03
CPSF3-202ENST00000460593 COX6CP09669 75 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 APRG1Q8IVJ8 170 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 TNFRSF18Q9Y5U5 241 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 TRBV6-5A0A0K0K1A5 114 aa8.61□□□□□ -1.03
CPSF3-202ENST00000460593 NDUFA4O00483 81 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 NPFFO15130 113 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 ABCA2Q9BZC7 2435 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 H3BT86 120 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 BLCAPP62952 87 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 MIAQ16674 131 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 TMEM61Q8N0U2 210 aa8.6□□□□□ -1.03
CPSF3-202ENST00000460593 IGHG2P01859 326 aa8.59□□□□□ -1.03
CPSF3-202ENST00000460593 RHOHQ15669 191 aa8.59□□□□□ -1.03
CPSF3-202ENST00000460593 IGHV1-58A0A0C4DH39 117 aa8.59□□□□□ -1.04
CPSF3-202ENST00000460593 C11orf71Q6IPW1 123 aa8.59□□□□□ -1.04
CPSF3-202ENST00000460593 Q8N2B8 174 aa8.59□□□□□ -1.04
CPSF3-202ENST00000460593 BPESC1Q9GZL8 116 aa8.59□□□□□ -1.04
CPSF3-202ENST00000460593 C9orf153Q5TBE3 101 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 C9orf85Q96MD7 179 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 CITED2Q99967 270 aaPredicted RBP8.58□□□□□ -1.04
CPSF3-202ENST00000460593 A0A0J9YX75 114 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 FAM223BA6NKX1 122 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 KLK9Q2XQG4 91 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 FAM223AQ8IWN6 122 aa8.58□□□□□ -1.04
CPSF3-202ENST00000460593 TMEM101Q96IK0 257 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 VSIG2Q96IQ7 327 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 CELSR2Q9HCU4 2923 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 C10orf99Q6UWK7 81 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 Q6ZSN1 163 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.57□□□□□ -1.04
CPSF3-202ENST00000460593 MOB4Q9Y3A3 225 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 TRBV7-7A0A0K0K1E9 115 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 DCANP1Q8TF63 244 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 CDKN2A-AS1Q9UH64 79 aa8.57□□□□□ -1.04
CPSF3-202ENST00000460593 MRPS36P82909 103 aaKnown RBP8.56□□□□□ -1.04
CPSF3-202ENST00000460593 C19orf54Q5BKX5 351 aa8.56□□□□□ -1.04
CPSF3-202ENST00000460593 HIVEP3Q5T1R4 2406 aa8.56□□□□□ -1.04
CPSF3-202ENST00000460593 SPANXDQ9BXN6 97 aa8.56□□□□□ -1.04
CPSF3-202ENST00000460593 SPANXCQ9NY87 97 aa8.56□□□□□ -1.04
CPSF3-202ENST00000460593 IGHV1OR15-1A0A075B7D0 117 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 HOXD3P31249 432 aaPredicted RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 DAZ1Q9NQZ3 744 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 YAE1D1Q9NRH1 226 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 NDUFA7O95182 113 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 LINC01600Q96MT4 127 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 RBMY1A1P0DJD3 496 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 RBMY1CP0DJD4 496 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 DAZ2Q13117 558 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 RBMY1FQ15415 496 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 DAZ4Q86SG3 579 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 Q9HAA7 133 aa8.55□□□□□ -1.04
CPSF3-202ENST00000460593 DAZ3Q9NR90 486 aaKnown RBP8.55□□□□□ -1.04
CPSF3-202ENST00000460593 SYNJ2BPP57105 145 aa8.54□□□□□ -1.04
CPSF3-202ENST00000460593 LINC00467Q9BRT7 94 aa8.54□□□□□ -1.04
CPSF3-202ENST00000460593 HERVK_113P63121 156 aa8.54□□□□□ -1.04
CPSF3-202ENST00000460593 COX6A2Q02221 97 aa8.54□□□□□ -1.04
CPSF3-202ENST00000460593 FAM240AA0A1B0GVK7 77 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 LMO4P61968 165 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 DEFB121Q5J5C9 76 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 SOSTDC1Q6X4U4 206 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 FAM218AQ96MZ4 157 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 CYSTM1Q9H1C7 97 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 H3BUX3 64 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 IGHV4-38-2P0DP08 117 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 ADORA2A-AS1P86434 159 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 ATP5J2P56134 94 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 Q9H8V8 135 aa8.53□□□□□ -1.04
CPSF3-202ENST00000460593 GAGE2AQ6NT46 116 aa8.52□□□□□ -1.05
CPSF3-202ENST00000460593 C3orf22Q8N5N4 141 aa8.52□□□□□ -1.05
CPSF3-202ENST00000460593 TMEM126AQ9H061 195 aa8.52□□□□□ -1.05
CPSF3-202ENST00000460593 MUC6Q6W4X9 2439 aa8.52□□□□□ -1.05
CPSF3-202ENST00000460593 LINC00308Q8TCZ7 52 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 CHCHD7Q9BUK0 85 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 BAALC-AS2P0C853 105 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 UBE2D4Q9Y2X8 147 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 TRAV13-1A0A0B4J241 112 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 PIK3CD-AS1Q5SR53 167 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 EDA2RQ9HAV5 297 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 C22orf24Q9Y442 160 aa8.51□□□□□ -1.05
CPSF3-202ENST00000460593 TIRAPP58753 221 aa8.5□□□□□ -1.05
CPSF3-202ENST00000460593 C9orf129Q5T035 196 aaKnown RBP8.5□□□□□ -1.05
CPSF3-202ENST00000460593 CSDC2Q9Y534 153 aaKnown RBP8.5□□□□□ -1.05
CPSF3-202ENST00000460593 TINCRA0A1B0GVN0 87 aa8.5□□□□□ -1.05
CPSF3-202ENST00000460593 hADV29S1A0JD25 119 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 SDIM1Q6ZPB5 146 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 COX7A2LO14548 114 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 KLRB1Q12918 225 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 HIST2H2BDQ6DRA6 164 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 PYGO1Q9Y3Y4 419 aa8.49□□□□□ -1.05
CPSF3-202ENST00000460593 NCOR2Q9Y618 2525 aa8.48□□□□□ -1.05
CPSF3-202ENST00000460593 ZANQ9Y493 2812 aa8.48□□□□□ -1.05
CPSF3-202ENST00000460593 IGKV3D-7A0A0C4DH55 119 aa8.48□□□□□ -1.05
CPSF3-202ENST00000460593 USMG5Q96IX5 58 aa8.48□□□□□ -1.05
CPSF3-202ENST00000460593 LINC00643Q86TS7 51 aa8.48□□□□□ -1.05
CPSF3-202ENST00000460593 A0A087WVE0 104 aa8.47□□□□□ -1.05
CPSF3-202ENST00000460593 SNRPD3P62318 126 aaKnown RBP8.47□□□□□ -1.05
CPSF3-202ENST00000460593 FAM19A5Q7Z5A7 132 aaPredicted RBP8.47□□□□□ -1.05
CPSF3-202ENST00000460593 NRGNQ92686 78 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms