RNA–Protein interactions for RNA: ENST00000459927.5

GPNMB-204, Transcript of glycoprotein nmb, humanhuman

TSL 4

Gene GPNMB, Length 577 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-204ENST00000459927 SMLR1H3BR10 107 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 NTF3P20783 257 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 C15orf56Q8N910 161 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 C7orf33Q8WU49 177 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 GTSF1Q8WW33 167 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 BATF3Q9NR55 127 aa7.75□□□□□ -1.17
GPNMB-204ENST00000459927 UBE2L6O14933 153 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 NDUFS6O75380 124 aaKnown RBP7.74□□□□□ -1.17
GPNMB-204ENST00000459927 SULT1A2P50226 295 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 MAJINQ3KP22 176 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 WDR73Q6P4I2 378 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 LYZL1Q6UWQ5 148 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 C9orf62Q8N4C0 152 aa7.74□□□□□ -1.17
GPNMB-204ENST00000459927 HMSDA8MTL9 139 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 TRGC1P0CF51 173 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 KRTAP10-8P60410 259 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 COTL1Q14019 142 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 ZNF345Q14585 488 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 C11orf52Q96A22 123 aa7.73□□□□□ -1.17
GPNMB-204ENST00000459927 IGKV3OR2-268A0A0C4DH90 116 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 XKRY2A2RUG3 117 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 IFNA1P01562 189 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 AMTP48728 403 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 CENPWQ5EE01 88 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 STPG4Q8N801 248 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 LYPD6BQ8NI32 183 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 GNG13Q9P2W3 67 aa7.72□□□□□ -1.17
GPNMB-204ENST00000459927 TRAV1-1A0A0B4J248 108 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 IGKV2-24A0A0C4DH68 120 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 ODF1Q14990 250 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 HIGD2BQ4VC39 106 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 GATD1Q8NB37 220 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 CHCHD10Q8WYQ3 142 aaPredicted RBP7.71□□□□□ -1.18
GPNMB-204ENST00000459927 SMIM12Q96EX1 92 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 MANBALQ9NQG1 85 aa7.71□□□□□ -1.18
GPNMB-204ENST00000459927 GNG4P50150 75 aa7.7□□□□□ -1.18
GPNMB-204ENST00000459927 PRR3P79522 188 aaKnown RBP7.7□□□□□ -1.18
GPNMB-204ENST00000459927 SRSF9Q13242 221 aaKnown RBP eCLIP7.7□□□□□ -1.18
GPNMB-204ENST00000459927 TWIST1Q15672 202 aa7.7□□□□□ -1.18
GPNMB-204ENST00000459927 NUDT10Q8NFP7 164 aa7.7□□□□□ -1.18
GPNMB-204ENST00000459927 NUDT11Q96G61 164 aa7.7□□□□□ -1.18
GPNMB-204ENST00000459927 A0A0J9YXV3 536 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 KANTRA0A1W2PQU2 76 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 H7C423 109 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 BCL2L11O43521 198 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 EIF5AP63241 154 aaKnown RBP7.69□□□□□ -1.18
GPNMB-204ENST00000459927 SPINK6Q6UWN8 80 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 BIN3Q9NQY0 253 aa7.69□□□□□ -1.18
GPNMB-204ENST00000459927 A0A096LNI7 61 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 GVQW2A0A096LPI5 108 aaPredicted RBP7.68□□□□□ -1.18
GPNMB-204ENST00000459927 FOXI1Q12951 378 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 AMMECR1LQ6DCA0 310 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 Q6ZNX1 250 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 CNFNQ9BYD5 112 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 MED9Q9NWA0 146 aa7.68□□□□□ -1.18
GPNMB-204ENST00000459927 TRBV20OR9-2A0A075B6H5 130 aa7.67□□□□□ -1.18
GPNMB-204ENST00000459927 TRAV26-2A0A0B4J265 109 aa7.67□□□□□ -1.18
GPNMB-204ENST00000459927 NCR2O95944 276 aa7.67□□□□□ -1.18
GPNMB-204ENST00000459927 RGS21Q2M5E4 152 aa7.67□□□□□ -1.18
GPNMB-204ENST00000459927 RNASEKQ6P5S7 137 aaKnown RBP7.67□□□□□ -1.18
GPNMB-204ENST00000459927 RPL39LQ96EH5 51 aaKnown RBP7.67□□□□□ -1.18
GPNMB-204ENST00000459927 LINC00474Q9P2X8 69 aa7.67□□□□□ -1.18
GPNMB-204ENST00000459927 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.66□□□□□ -1.18
GPNMB-204ENST00000459927 IGKV2-29A2NJV5 120 aaPredicted RBP7.66□□□□□ -1.18
GPNMB-204ENST00000459927 FAM231BA6NCW3 169 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 PDE6DO43924 150 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 FGF6P10767 208 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 CTRLP40313 264 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 FOXA3P55318 350 aaPredicted RBP7.66□□□□□ -1.18
GPNMB-204ENST00000459927 MEF2BQ02080 365 aaPredicted RBP7.66□□□□□ -1.18
GPNMB-204ENST00000459927 REG3GQ6UW15 175 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 OR5A1Q8NGJ0 315 aa7.66□□□□□ -1.18
GPNMB-204ENST00000459927 TEX46H3BTG2 121 aa7.65□□□□□ -1.18
GPNMB-204ENST00000459927 OCC1Q8TAD7 63 aa7.65□□□□□ -1.18
GPNMB-204ENST00000459927 LINC00526Q96FQ7 95 aa7.65□□□□□ -1.18
GPNMB-204ENST00000459927 IGHV1-58A0A0C4DH39 117 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 LINC00959A0A1B0GUT2 108 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 SDHAF1A6NFY7 115 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 XCL1P47992 114 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 TEX261Q6UWH6 196 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 Q6ZRP5 223 aa7.64□□□□□ -1.19
GPNMB-204ENST00000459927 RNASE7Q9H1E1 156 aaKnown RBP7.64□□□□□ -1.19
GPNMB-204ENST00000459927 I3L3M4 83 aa7.63□□□□□ -1.19
GPNMB-204ENST00000459927 APCSP02743 223 aa7.63□□□□□ -1.19
GPNMB-204ENST00000459927 ESDP10768 282 aa7.63□□□□□ -1.19
GPNMB-204ENST00000459927 ZNF25P17030 456 aaPredicted RBP7.63□□□□□ -1.19
GPNMB-204ENST00000459927 PMCHP20382 165 aa7.63□□□□□ -1.19
GPNMB-204ENST00000459927 RPP21Q9H633 154 aaKnown RBP7.63□□□□□ -1.19
GPNMB-204ENST00000459927 K7EN84 100 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 CCL25O15444 150 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 EIF5AL1Q6IS14 154 aaKnown RBP7.62□□□□□ -1.19
GPNMB-204ENST00000459927 SMIM15Q7Z3B0 74 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 TMEM101Q96IK0 257 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 BTF3L4Q96K17 158 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 PKIGQ9Y2B9 76 aa7.62□□□□□ -1.19
GPNMB-204ENST00000459927 TRBV6-5A0A0K0K1A5 114 aa7.61□□□□□ -1.19
GPNMB-204ENST00000459927 ZNF561-AS1K7EIQ3 104 aa7.61□□□□□ -1.19
GPNMB-204ENST00000459927 SYCNQ0VAF6 134 aa7.61□□□□□ -1.19
GPNMB-204ENST00000459927 SS18Q15532 418 aa7.61□□□□□ -1.19
GPNMB-204ENST00000459927 CD164L2Q6UWJ8 174 aa7.61□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms