RNA–Protein interactions for RNA: ENST00000457422.6

CCDC43-202, Transcript of coiled-coil domain containing 43, humanhuman

TSL 1 (best) BASIC

Gene CCDC43, Length 2,058 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-202ENST00000457422 SAP30O75446 220 aa12.07□□□□□ -0.48
CCDC43-202ENST00000457422 NDUFA7O95182 113 aa12.07□□□□□ -0.48
CCDC43-202ENST00000457422 SAMD5Q5TGI4 173 aa12.07□□□□□ -0.48
CCDC43-202ENST00000457422 FAM110AQ9BQ89 295 aa12.07□□□□□ -0.48
CCDC43-202ENST00000457422 IGHV3OR16-12A0A075B7B8 117 aa12.06□□□□□ -0.48
CCDC43-202ENST00000457422 A0A1B0GWB2 263 aa12.06□□□□□ -0.48
CCDC43-202ENST00000457422 FABP2P12104 132 aa12.06□□□□□ -0.48
CCDC43-202ENST00000457422 AMELXQ99217 191 aa12.06□□□□□ -0.48
CCDC43-202ENST00000457422 SMR3AQ99954 134 aa12.06□□□□□ -0.48
CCDC43-202ENST00000457422 GAGE12BA1L429 117 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 ADARB2-AS1A8MUL3 147 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 IGLV1-51P01701 117 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 C12orf74Q32Q52 190 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 SCGB1D4Q6XE38 83 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 RNASE8Q8TDE3 154 aaKnown RBP12.05□□□□□ -0.48
CCDC43-202ENST00000457422 PLEKHB2Q96CS7 222 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 VCX2Q9H322 139 aa12.05□□□□□ -0.48
CCDC43-202ENST00000457422 OR5A1Q8NGJ0 315 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 FAM104AQ969W3 186 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 CHCHD7Q9BUK0 85 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 SPCS1Q9Y6A9 102 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 FASNP49327 2511 aaKnown RBP12.04□□□□□ -0.48
CCDC43-202ENST00000457422 TMEM223A0PJW6 202 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 TSPEAR-AS2P59090 65 aa12.04□□□□□ -0.48
CCDC43-202ENST00000457422 ZNF22P17026 224 aaPredicted RBP12.03□□□□□ -0.48
CCDC43-202ENST00000457422 A0A0J9YY99 117 aa12.02□□□□□ -0.48
CCDC43-202ENST00000457422 FOSL1P15407 271 aa12.02□□□□□ -0.48
CCDC43-202ENST00000457422 TMEM263Q8WUH6 116 aaKnown RBP12.02□□□□□ -0.48
CCDC43-202ENST00000457422 SPANXA1Q9NS26 97 aa12.02□□□□□ -0.48
CCDC43-202ENST00000457422 IGLL5B9A064 214 aa12.02□□□□□ -0.49
CCDC43-202ENST00000457422 J3QQQ9 107 aa12.02□□□□□ -0.49
CCDC43-202ENST00000457422 WFDC10AQ9H1F0 79 aa12.02□□□□□ -0.49
CCDC43-202ENST00000457422 SPANXB1Q9NS25 103 aaPredicted RBP12.02□□□□□ -0.49
CCDC43-202ENST00000457422 NIPBLQ6KC79 2804 aaeCLIP12.01□□□□□ -0.49
CCDC43-202ENST00000457422 LEPROTO15243 131 aa12.01□□□□□ -0.49
CCDC43-202ENST00000457422 C19orf73Q9NVV2 129 aa12.01□□□□□ -0.49
CCDC43-202ENST00000457422 SETXQ7Z333 2677 aaKnown RBP12.01□□□□□ -0.49
CCDC43-202ENST00000457422 TRGV1A0A0A0MS02 117 aa12.01□□□□□ -0.49
CCDC43-202ENST00000457422 A0A0J9YXV3 536 aa12.01□□□□□ -0.49
CCDC43-202ENST00000457422 GIG44P09565 113 aaPredicted RBP12.01□□□□□ -0.49
CCDC43-202ENST00000457422 MRPS36P82909 103 aaKnown RBP12.01□□□□□ -0.49
CCDC43-202ENST00000457422 UBE2D4Q9Y2X8 147 aa12.01□□□□□ -0.49
CCDC43-202ENST00000457422 TMEM238LA0A1B0GVL6 79 aa12□□□□□ -0.49
CCDC43-202ENST00000457422 A6NJY4 79 aa12□□□□□ -0.49
CCDC43-202ENST00000457422 CEMP1Q6PRD7 247 aaPredicted RBP12□□□□□ -0.49
CCDC43-202ENST00000457422 IGHV3-38A0A0C4DH36 116 aa11.99□□□□□ -0.49
CCDC43-202ENST00000457422 LGALS3P17931 250 aaKnown RBP11.99□□□□□ -0.49
CCDC43-202ENST00000457422 SRSF9Q13242 221 aaKnown RBP eCLIP11.99□□□□□ -0.49
CCDC43-202ENST00000457422 COTL1Q14019 142 aa11.99□□□□□ -0.49
CCDC43-202ENST00000457422 SLC25A29Q8N8R3 303 aa11.99□□□□□ -0.49
CCDC43-202ENST00000457422 ZNF479Q96JC4 524 aa11.99□□□□□ -0.49
CCDC43-202ENST00000457422 GCN1Q92616 2671 aaKnown RBP11.98□□□□□ -0.49
CCDC43-202ENST00000457422 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.98□□□□□ -0.49
CCDC43-202ENST00000457422 TRAV4A0A0B4J268 109 aa11.98□□□□□ -0.49
CCDC43-202ENST00000457422 IGKV2-29A2NJV5 120 aaPredicted RBP11.98□□□□□ -0.49
CCDC43-202ENST00000457422 RPL35AP18077 110 aaKnown RBP11.98□□□□□ -0.49
CCDC43-202ENST00000457422 UBE2D1P51668 147 aa11.98□□□□□ -0.49
CCDC43-202ENST00000457422 DAZ2Q13117 558 aaKnown RBP11.98□□□□□ -0.49
CCDC43-202ENST00000457422 RRN3P1Q2M238 152 aa11.98□□□□□ -0.49
CCDC43-202ENST00000457422 JMJD1CQ15652 2540 aa11.97□□□□□ -0.49
CCDC43-202ENST00000457422 TRBV10-1A0A0K0K1A3 114 aa11.97□□□□□ -0.49
CCDC43-202ENST00000457422 OCIAD2Q56VL3 154 aa11.97□□□□□ -0.49
CCDC43-202ENST00000457422 RNASE13Q5GAN3 156 aaKnown RBP11.97□□□□□ -0.49
CCDC43-202ENST00000457422 Q6ZTI0 123 aa11.97□□□□□ -0.49
CCDC43-202ENST00000457422 HIVEP2P31629 2446 aa11.97□□□□□ -0.49
CCDC43-202ENST00000457422 LY6G6DO95868 133 aa11.96□□□□□ -0.49
CCDC43-202ENST00000457422 KRTAP10-3P60369 221 aa11.96□□□□□ -0.49
CCDC43-202ENST00000457422 RBX1P62877 108 aa11.96□□□□□ -0.49
CCDC43-202ENST00000457422 TINCRA0A1B0GVN0 87 aa11.96□□□□□ -0.5
CCDC43-202ENST00000457422 NDUFA11Q86Y39 141 aa11.96□□□□□ -0.5
CCDC43-202ENST00000457422 C16orf74Q96GX8 76 aa11.96□□□□□ -0.5
CCDC43-202ENST00000457422 TIMM21Q9BVV7 248 aa11.96□□□□□ -0.5
CCDC43-202ENST00000457422 C1QTNF4Q9BXJ3 329 aa11.96□□□□□ -0.5
CCDC43-202ENST00000457422 IGHV3-64A0A075B6Q5 118 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 K7EQD1 137 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 IGHV3-30P01768 117 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 IGHV3-30-5P0DP03 117 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 HECTD1Q9ULT8 2610 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 PLAC8L1A1L4L8 177 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 CSNK1G2-AS1Q8NCQ2 148 aa11.95□□□□□ -0.5
CCDC43-202ENST00000457422 Q6ZUT4 128 aa11.94□□□□□ -0.5
CCDC43-202ENST00000457422 NOP10Q9NPE3 64 aaKnown RBP11.94□□□□□ -0.5
CCDC43-202ENST00000457422 RPL36AP83881 106 aaKnown RBP11.93□□□□□ -0.5
CCDC43-202ENST00000457422 RPL36ALQ969Q0 106 aaKnown RBP11.93□□□□□ -0.5
CCDC43-202ENST00000457422 CBY1Q9Y3M2 126 aa11.93□□□□□ -0.5
CCDC43-202ENST00000457422 IGHV3-30-3P0DP02 117 aa11.92□□□□□ -0.5
CCDC43-202ENST00000457422 DAZ4Q86SG3 579 aaKnown RBP11.92□□□□□ -0.5
CCDC43-202ENST00000457422 DAZ3Q9NR90 486 aaKnown RBP11.92□□□□□ -0.5
CCDC43-202ENST00000457422 IGHV1-58A0A0C4DH39 117 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 CIDEAO60543 219 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 OVOL2Q9BRP0 275 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 K7ERU9 68 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 UBE2D3P61077 147 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 UBE2D2P62837 147 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 PGPEP1Q9NXJ5 209 aa11.91□□□□□ -0.5
CCDC43-202ENST00000457422 PF4P02776 101 aa11.9□□□□□ -0.5
CCDC43-202ENST00000457422 C10orf126Q8N4M7 172 aa11.9□□□□□ -0.5
CCDC43-202ENST00000457422 LINC00482Q8N8I6 264 aa11.9□□□□□ -0.5
CCDC43-202ENST00000457422 CSDC2Q9Y534 153 aaKnown RBP11.9□□□□□ -0.51
CCDC43-202ENST00000457422 NOTCH3Q9UM47 2321 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms