RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 HMSDA8MTL9 139 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 NTF3P20783 257 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 RPS10P46783 165 aaKnown RBP8.45□□□□□ -1.06
HMGB3-204ENST00000448905 CENPWQ5EE01 88 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 EIF5AL1Q6IS14 154 aaKnown RBP8.45□□□□□ -1.06
HMGB3-204ENST00000448905 SPACA4Q8TDM5 124 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 PLAC8Q9NZF1 115 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 PKHD1L1Q86WI1 4243 aa8.45□□□□□ -1.06
HMGB3-204ENST00000448905 GAGE12HA6NDE8 117 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 SMLR1H3BR10 107 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 PDE6DO43924 150 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 MT1HL1P0DM35 61 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 CCL20P78556 96 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 AMMECR1LQ6DCA0 310 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 LYZL1Q6UWQ5 148 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 C9orf62Q8N4C0 152 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 GTSF1Q8WW33 167 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 C11orf52Q96A22 123 aa8.44□□□□□ -1.06
HMGB3-204ENST00000448905 TRAV1-1A0A0B4J248 108 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 C19orf71A6NCJ1 209 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 BCL2L11O43521 198 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 NDUFS6O75380 124 aaKnown RBP8.43□□□□□ -1.06
HMGB3-204ENST00000448905 SLPIP03973 132 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 COX6A2Q02221 97 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 TWIST1Q15672 202 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 SMIM15Q7Z3B0 74 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 PKIGQ9Y2B9 76 aa8.43□□□□□ -1.06
HMGB3-204ENST00000448905 IGKV3OR2-268A0A0C4DH90 116 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 RAB19A4D1S5 217 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 CHTF8P0CG12 524 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 MAJINQ3KP22 176 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 GFRA4Q9GZZ7 299 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 MED9Q9NWA0 146 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 LINC00474Q9P2X8 69 aa8.42□□□□□ -1.06
HMGB3-204ENST00000448905 H7C423 109 aa8.41□□□□□ -1.06
HMGB3-204ENST00000448905 PHOX2AO14813 284 aa8.41□□□□□ -1.06
HMGB3-204ENST00000448905 TEX261Q6UWH6 196 aa8.41□□□□□ -1.06
HMGB3-204ENST00000448905 NCR2O95944 276 aa8.4□□□□□ -1.06
HMGB3-204ENST00000448905 MEF2BQ02080 365 aaPredicted RBP8.4□□□□□ -1.06
HMGB3-204ENST00000448905 RNASEKQ6P5S7 137 aaKnown RBP8.4□□□□□ -1.06
HMGB3-204ENST00000448905 STPG4Q8N801 248 aa8.4□□□□□ -1.06
HMGB3-204ENST00000448905 IGKV2-24A0A0C4DH68 120 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 NUDT10Q8NFP7 164 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 CHCHD10Q8WYQ3 142 aaPredicted RBP8.39□□□□□ -1.07
HMGB3-204ENST00000448905 NUDT11Q96G61 164 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 TMEM101Q96IK0 257 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 BTF3L4Q96K17 158 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 LINC01600Q96MT4 127 aa8.39□□□□□ -1.07
HMGB3-204ENST00000448905 HIGD2BQ4VC39 106 aa8.38□□□□□ -1.07
HMGB3-204ENST00000448905 C15orf56Q8N910 161 aa8.38□□□□□ -1.07
HMGB3-204ENST00000448905 GATD1Q8NB37 220 aa8.38□□□□□ -1.07
HMGB3-204ENST00000448905 PRSS3P2Q8NHM4 247 aa8.38□□□□□ -1.07
HMGB3-204ENST00000448905 LYPD6BQ8NI32 183 aa8.38□□□□□ -1.07
HMGB3-204ENST00000448905 PMCHP20382 165 aa8.37□□□□□ -1.07
HMGB3-204ENST00000448905 TAGLN2P37802 199 aaKnown RBP8.37□□□□□ -1.07
HMGB3-204ENST00000448905 REG3GQ6UW15 175 aa8.37□□□□□ -1.07
HMGB3-204ENST00000448905 FAM210AQ96ND0 272 aa8.37□□□□□ -1.07
HMGB3-204ENST00000448905 GVQW2A0A096LPI5 108 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-204ENST00000448905 APCSP02743 223 aa8.36□□□□□ -1.07
HMGB3-204ENST00000448905 FGF6P10767 208 aa8.36□□□□□ -1.07
HMGB3-204ENST00000448905 ZNF25P17030 456 aaPredicted RBP8.36□□□□□ -1.07
HMGB3-204ENST00000448905 CTRLP40313 264 aa8.36□□□□□ -1.07
HMGB3-204ENST00000448905 SPINK6Q6UWN8 80 aa8.36□□□□□ -1.07
HMGB3-204ENST00000448905 CNFNQ9BYD5 112 aa8.36□□□□□ -1.07
HMGB3-204ENST00000448905 RPP21Q9H633 154 aaKnown RBP8.36□□□□□ -1.07
HMGB3-204ENST00000448905 TRAV26-2A0A0B4J265 109 aa8.35□□□□□ -1.07
HMGB3-204ENST00000448905 I3L3M4 83 aa8.35□□□□□ -1.07
HMGB3-204ENST00000448905 PRR3P79522 188 aaKnown RBP8.35□□□□□ -1.07
HMGB3-204ENST00000448905 OR5A1Q8NGJ0 315 aa8.35□□□□□ -1.07
HMGB3-204ENST00000448905 TRBV20OR9-2A0A075B6H5 130 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-204ENST00000448905 IGHV1-58A0A0C4DH39 117 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 IGKV2-29A2NJV5 120 aaPredicted RBP8.34□□□□□ -1.07
HMGB3-204ENST00000448905 SDHAF1A6NFY7 115 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 ZNF561-AS1K7EIQ3 104 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 XCL1P47992 114 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 SS18Q15532 418 aa8.34□□□□□ -1.07
HMGB3-204ENST00000448905 BCL2P10415 239 aa8.33□□□□□ -1.08
HMGB3-204ENST00000448905 FOXI1Q12951 378 aa8.33□□□□□ -1.08
HMGB3-204ENST00000448905 Q6ZNX1 250 aa8.33□□□□□ -1.08
HMGB3-204ENST00000448905 Q6ZRP5 223 aa8.33□□□□□ -1.08
HMGB3-204ENST00000448905 BORCS7Q96B45 105 aa8.33□□□□□ -1.08
HMGB3-204ENST00000448905 RNASE7Q9H1E1 156 aaKnown RBP8.33□□□□□ -1.08
HMGB3-204ENST00000448905 A0A0J9YXV3 536 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 LINC00959A0A1B0GUT2 108 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 A8MWL6 223 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 CCL25O15444 150 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 ODF1Q14990 250 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 OCC1Q8TAD7 63 aa8.32□□□□□ -1.08
HMGB3-204ENST00000448905 RPL39LQ96EH5 51 aaKnown RBP8.32□□□□□ -1.08
HMGB3-204ENST00000448905 A0A096LNI7 61 aa8.31□□□□□ -1.08
HMGB3-204ENST00000448905 ISOC2Q96AB3 205 aa8.31□□□□□ -1.08
HMGB3-204ENST00000448905 CARD19Q96LW7 228 aa8.31□□□□□ -1.08
HMGB3-204ENST00000448905 ST20Q9HBF5 79 aa8.31□□□□□ -1.08
HMGB3-204ENST00000448905 TRBV6-5A0A0K0K1A5 114 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 GATCO43716 136 aaKnown RBP8.3□□□□□ -1.08
HMGB3-204ENST00000448905 SYCNQ0VAF6 134 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 SMAGPQ0VAQ4 97 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 CD164L2Q6UWJ8 174 aa8.3□□□□□ -1.08
HMGB3-204ENST00000448905 MRAP2Q96G30 205 aa8.3□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 92.8 ms