RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 RBX1P62877 108 aa12.46□□□□□ -0.41
SHH-204ENST00000441114 HBBP68871 147 aa12.46□□□□□ -0.41
SHH-204ENST00000441114 MRPL51Q4U2R6 128 aaKnown RBP12.46□□□□□ -0.41
SHH-204ENST00000441114 IGKV2D-24A0A075B6R9 120 aa12.45□□□□□ -0.42
SHH-204ENST00000441114 UBE2L6O14933 153 aa12.45□□□□□ -0.42
SHH-204ENST00000441114 FAM104BQ5XKR9 115 aa12.45□□□□□ -0.42
SHH-204ENST00000441114 KRTAP17-1Q9BYP8 105 aa12.45□□□□□ -0.42
SHH-204ENST00000441114 TRBV6-5A0A0K0K1A5 114 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 LINC00862A6NCI5 91 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 CRPP02741 224 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 S100A8P05109 93 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 CLPSL2Q6UWE3 100 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 RMI2Q96E14 147 aa12.44□□□□□ -0.42
SHH-204ENST00000441114 A0A1B0GXF2 115 aa12.43□□□□□ -0.42
SHH-204ENST00000441114 I3L3M4 83 aa12.43□□□□□ -0.42
SHH-204ENST00000441114 ENHOQ6UWT2 76 aa12.43□□□□□ -0.42
SHH-204ENST00000441114 APCSP02743 223 aa12.42□□□□□ -0.42
SHH-204ENST00000441114 Q0VG73 95 aa12.42□□□□□ -0.42
SHH-204ENST00000441114 TMEM70Q9BUB7 260 aa12.42□□□□□ -0.42
SHH-204ENST00000441114 SEC11CQ9BY50 192 aa12.42□□□□□ -0.42
SHH-204ENST00000441114 TMEM242Q9NWH2 141 aa12.42□□□□□ -0.42
SHH-204ENST00000441114 LRCOL1A6NCL2 159 aa12.41□□□□□ -0.42
SHH-204ENST00000441114 CKS2P33552 79 aa12.41□□□□□ -0.42
SHH-204ENST00000441114 LINC00269Q8N2A0 174 aa12.41□□□□□ -0.42
SHH-204ENST00000441114 IGLV4-60A0A075B6I1 120 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.4□□□□□ -0.42
SHH-204ENST00000441114 IGKV2-29A2NJV5 120 aaPredicted RBP12.4□□□□□ -0.42
SHH-204ENST00000441114 LECT2O14960 151 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 POLR2KP53803 58 aaKnown RBP12.4□□□□□ -0.42
SHH-204ENST00000441114 ATP5L2Q7Z4Y8 100 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 NRACQ8N912 160 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 C1orf43Q9BWL3 253 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 COX11Q9Y6N1 276 aa12.4□□□□□ -0.42
SHH-204ENST00000441114 DNAH11Q96DT5 4516 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 PPP1R17O96001 155 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 TSHBP01222 138 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 MAPKAPK5-AS1Q8N8E1 139 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 C20orf203Q8NBC4 194 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 BAALCQ8WXS3 180 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 PGPEP1Q9NXJ5 209 aa12.39□□□□□ -0.43
SHH-204ENST00000441114 D6R8Y8 96 aa12.38□□□□□ -0.43
SHH-204ENST00000441114 SUMO2P61956 95 aaKnown RBP12.38□□□□□ -0.43
SHH-204ENST00000441114 WFDC2Q14508 124 aa12.38□□□□□ -0.43
SHH-204ENST00000441114 AMMECR1LQ6DCA0 310 aa12.38□□□□□ -0.43
SHH-204ENST00000441114 RNASEKQ6P5S7 137 aaKnown RBP12.38□□□□□ -0.43
SHH-204ENST00000441114 A0A1B0GUV1 79 aa12.37□□□□□ -0.43
SHH-204ENST00000441114 VCYO14598 125 aa12.37□□□□□ -0.43
SHH-204ENST00000441114 REG3AQ06141 175 aa12.37□□□□□ -0.43
SHH-204ENST00000441114 BTF3L4Q96K17 158 aa12.37□□□□□ -0.43
SHH-204ENST00000441114 CTDSP1Q9GZU7 261 aa12.37□□□□□ -0.43
SHH-204ENST00000441114 TRBV27A0A0K0K1C4 114 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 TNFRSF6BO95407 300 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 FCER1GP30273 86 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 MIAQ16674 131 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 Q8N814 137 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 PRR34Q9NV39 138 aa12.36□□□□□ -0.43
SHH-204ENST00000441114 PKHD1P08F94 4074 aa12.35□□□□□ -0.43
SHH-204ENST00000441114 IGLV10-54A0A075B6I4 117 aa12.35□□□□□ -0.43
SHH-204ENST00000441114 IGKV3OR2-268A0A0C4DH90 116 aa12.35□□□□□ -0.43
SHH-204ENST00000441114 DYNC1H1Q14204 4646 aaKnown RBP12.34□□□□□ -0.43
SHH-204ENST00000441114 NPYP01303 97 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 HLA-DQA1P01909 254 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 FGF6P10767 208 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 C10orf91Q5T1B1 145 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 TMEM136Q6ZRR5 245 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 IMMP2LQ96T52 175 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 KIR2DL4Q99706 377 aa12.34□□□□□ -0.43
SHH-204ENST00000441114 C7orf77A4D0Y5 90 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 H7C423 109 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 ESDP10768 282 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 CDPF1Q6NVV7 123 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 ORMDL3Q8N138 153 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 C20orf78Q9BR46 151 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 RPS10P5Q9NQ39 176 aa12.33□□□□□ -0.44
SHH-204ENST00000441114 CARHSP1Q9Y2V2 147 aaKnown RBP12.33□□□□□ -0.44
SHH-204ENST00000441114 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.32□□□□□ -0.44
SHH-204ENST00000441114 TRBV24-1A0A075B6N3 115 aa12.32□□□□□ -0.44
SHH-204ENST00000441114 IGLV5-52A0A0A0MRZ9 124 aa12.32□□□□□ -0.44
SHH-204ENST00000441114 PPBPP02775 128 aa12.32□□□□□ -0.44
SHH-204ENST00000441114 CLRN3Q8NCR9 226 aa12.32□□□□□ -0.44
SHH-204ENST00000441114 PRELID3AQ96N28 172 aa12.32□□□□□ -0.44
SHH-204ENST00000441114 S100PP25815 95 aa12.31□□□□□ -0.44
SHH-204ENST00000441114 TMEM101Q96IK0 257 aa12.31□□□□□ -0.44
SHH-204ENST00000441114 SMIM2Q9BVW6 85 aa12.3□□□□□ -0.44
SHH-204ENST00000441114 APOC3P02656 99 aa12.29□□□□□ -0.44
SHH-204ENST00000441114 ZNF25P17030 456 aaPredicted RBP12.29□□□□□ -0.44
SHH-204ENST00000441114 OR5A1Q8NGJ0 315 aa12.29□□□□□ -0.44
SHH-204ENST00000441114 NTN5Q8WTR8 489 aaPredicted RBP12.29□□□□□ -0.44
SHH-204ENST00000441114 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 LOC389332A0A1B0GUA5 103 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 PHOX2AO14813 284 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 GCSHP23434 173 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 RPL32P62910 135 aaKnown RBP12.28□□□□□ -0.44
SHH-204ENST00000441114 RHEBQ15382 184 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 KRTAP26-1Q6PEX3 210 aa12.28□□□□□ -0.44
SHH-204ENST00000441114 TRAV9-1A0A075B6T8 112 aa12.27□□□□□ -0.45
SHH-204ENST00000441114 TCAPO15273 167 aa12.27□□□□□ -0.45
SHH-204ENST00000441114 KRTAP10-1P60331 282 aa12.27□□□□□ -0.45
SHH-204ENST00000441114 DGAT2L7PQ6IED9 249 aa12.27□□□□□ -0.45
SHH-204ENST00000441114 USP17L23D6RBM5 183 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms