RNA–Protein interactions for RNA: ENST00000439369.6

SCLT1-202, Transcript of sodium channel and clathrin linker 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCLT1, Length 966 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCLT1-202ENST00000439369 HIST1H2BCP62807 126 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 HIST2H2BEQ16778 126 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 ORMDL2Q53FV1 153 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.75□□□□□ -1.01
SCLT1-202ENST00000439369 CASC10Q5T4H9 136 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 FA2HQ7L5A8 372 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 HIST1H2BHQ93079 126 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 HIST1H2BNQ99877 126 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 HIST1H2BMQ99879 126 aa8.75□□□□□ -1.01
SCLT1-202ENST00000439369 MRPS16Q9Y3D3 137 aaKnown RBP8.75□□□□□ -1.01
SCLT1-202ENST00000439369 LINC01549A6NIU2 74 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 H7C423 109 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 AMTP48728 403 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 ESRGQ1W209 222 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 NTM-AS1Q6ZSK4 140 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 CHCHD1Q96BP2 118 aaKnown RBP8.74□□□□□ -1.01
SCLT1-202ENST00000439369 AP5S1Q9NUS5 200 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 TGP01266 2768 aa8.74□□□□□ -1.01
SCLT1-202ENST00000439369 TRAV8-6A0A0B4J262 113 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 LINC00614P0C842 121 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 ESDP10768 282 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 SMAGPQ0VAQ4 97 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 LAGE3Q14657 143 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 BAGE3Q86Y29 109 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 TMEM18Q96B42 140 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 UPK3BQ9BT76 320 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 TMEM243Q9BU79 118 aa8.73□□□□□ -1.01
SCLT1-202ENST00000439369 COA6Q5JTJ3 125 aaKnown RBP8.72□□□□□ -1.01
SCLT1-202ENST00000439369 NIT1Q86X76 327 aa8.72□□□□□ -1.01
SCLT1-202ENST00000439369 C20orf203Q8NBC4 194 aa8.71□□□□□ -1.02
SCLT1-202ENST00000439369 URB1-AS1Q96HZ7 61 aa8.71□□□□□ -1.02
SCLT1-202ENST00000439369 CHCHD7Q9BUK0 85 aa8.71□□□□□ -1.02
SCLT1-202ENST00000439369 LINC00588Q9Y4M8 146 aa8.71□□□□□ -1.02
SCLT1-202ENST00000439369 LGALS9CQ6DKI2 356 aa8.7□□□□□ -1.02
SCLT1-202ENST00000439369 RNASEKQ6P5S7 137 aaKnown RBP8.7□□□□□ -1.02
SCLT1-202ENST00000439369 MRPL52Q86TS9 123 aaKnown RBP8.7□□□□□ -1.02
SCLT1-202ENST00000439369 CHCHD5Q9BSY4 110 aa8.7□□□□□ -1.02
SCLT1-202ENST00000439369 TIMM21Q9BVV7 248 aa8.7□□□□□ -1.02
SCLT1-202ENST00000439369 K7EP13 123 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 UBE2L6O14933 153 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 SERF1AO75920 110 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 NPSP0C0P6 89 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 ZNF25P17030 456 aaPredicted RBP8.69□□□□□ -1.02
SCLT1-202ENST00000439369 UBE2DNLQ8IWF7 75 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 CYSLTR1Q9Y271 337 aa8.69□□□□□ -1.02
SCLT1-202ENST00000439369 HSBP1O75506 76 aa8.68□□□□□ -1.02
SCLT1-202ENST00000439369 DNAH10OSP0CZ25 163 aa8.68□□□□□ -1.02
SCLT1-202ENST00000439369 SPANXA1Q9NS26 97 aa8.68□□□□□ -1.02
SCLT1-202ENST00000439369 CSDC2Q9Y534 153 aaKnown RBP8.68□□□□□ -1.02
SCLT1-202ENST00000439369 A0A1B0GUV1 79 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 SIVA1O15304 175 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 HBDP02042 147 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 LINC00310P59036 64 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 LINC01556Q5JQF7 62 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 C2orf66Q6UXQ4 117 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 TOMM6Q96B49 74 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 PYGO1Q9Y3Y4 419 aa8.67□□□□□ -1.02
SCLT1-202ENST00000439369 A0A087WX48 190 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 FGF6P10767 208 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 BTF3P20290 206 aaKnown RBP8.66□□□□□ -1.02
SCLT1-202ENST00000439369 NDUFA6P56556 154 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 AMMECR1LQ6DCA0 310 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 WFDC10BQ8IUB3 73 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 DEFB104AQ8WTQ1 72 aa8.66□□□□□ -1.02
SCLT1-202ENST00000439369 IGKV2D-29A0A075B6S2 120 aaPredicted RBP8.65□□□□□ -1.02
SCLT1-202ENST00000439369 IGKV2-29A2NJV5 120 aaPredicted RBP8.65□□□□□ -1.02
SCLT1-202ENST00000439369 TMEM262E9PQX1 116 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 S100A6P06703 90 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 GAGE6Q13070 117 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 ERASQ7Z444 233 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 TMEM101Q96IK0 257 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 PACRGQ96M98 296 aaPredicted RBP8.65□□□□□ -1.02
SCLT1-202ENST00000439369 UBE2D4Q9Y2X8 147 aa8.65□□□□□ -1.02
SCLT1-202ENST00000439369 TRAV9-2A0A087WT02 112 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 A0A096LNJ9 63 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 RBX1P62877 108 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 MRPS36P82909 103 aaKnown RBP8.64□□□□□ -1.03
SCLT1-202ENST00000439369 PDZD11Q5EBL8 140 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 PAPPA-AS1Q5QFB9 102 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 OR5A1Q8NGJ0 315 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 LINC00476Q8WZB0 136 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 TMEM141Q96I45 108 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 TIMM17AQ99595 171 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 Q9H8V8 135 aa8.64□□□□□ -1.03
SCLT1-202ENST00000439369 IGIPA6NJ69 53 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 ATP5LO75964 103 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 RPL39P62891 51 aaKnown RBP8.63□□□□□ -1.03
SCLT1-202ENST00000439369 MPV17L2Q567V2 206 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 TTC32Q5I0X7 151 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 DGAT2L7PQ6IED9 249 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 C10orf126Q8N4M7 172 aa8.63□□□□□ -1.03
SCLT1-202ENST00000439369 DNAH7Q8WXX0 4024 aa8.62□□□□□ -1.03
SCLT1-202ENST00000439369 NUPR1O60356 82 aa8.62□□□□□ -1.03
SCLT1-202ENST00000439369 SCGB3A1Q96QR1 104 aa8.62□□□□□ -1.03
SCLT1-202ENST00000439369 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.61□□□□□ -1.03
SCLT1-202ENST00000439369 PMCHL1Q16048 86 aa8.61□□□□□ -1.03
SCLT1-202ENST00000439369 FAM19A2Q8N3H0 131 aa8.61□□□□□ -1.03
SCLT1-202ENST00000439369 ZNF664Q8N3J9 261 aa8.61□□□□□ -1.03
SCLT1-202ENST00000439369 CDC42SE2Q9NRR3 84 aa8.61□□□□□ -1.03
SCLT1-202ENST00000439369 HSPB8Q9UJY1 196 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms